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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGGATTAGCAGATATTTTAAAGCCTGATTTGATACTGCCATTGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaatttgctttttcattgttttttgtttcaaatcctttagtcttatgtcactgttggagataattttctcttcctttccctgtcctttcttttcttctgtgtgtggggcag

Basic information

species Vitis vinifera
transcript Vv11s0065g00450.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0065g00450.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G03080.1 (Glycine max), 5'ss of exon 11
GTTTGGGATTAGCAGATATTTTAAAGCCTGATTTGATACTGCCATTGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgta--ttgcaatttgctttttca-ttgttttttgtttcaaatcctttagtcttatgtcactgttggagataattttctcttcctttccctgtcctttcttttcttctgtgtgtggggcag
| |||||| | |  ||||| || ||||||||| | ||| |||||||||| || ||||||||  |||| || ||||||||  | |||||||||||||||  |  |||| || | ||| | || |  | |  ||  | |     | || |     | | || ||  ||                                                 
GCTTGGGACTTGGGGATATATTGAAGCCTGATCTAATAATGCCATTGATGGATACATTACCTTTGGAGCAGCGTTTAGCTCCCTACTTACCTGAGgtacatgacaatgtggtgtttgagttttagtattctttcatttacagattcatgcaatattctttgatgtag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702756|gb|EE079004.1|EE079004
EST:     TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAG                         GGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
genomic: TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaat ... tgtggggcagGGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
EST: gi|110395278|gb|EC960936.1|EC960936
EST:     TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAG                         GGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
genomic: TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaat ... tgtggggcagGGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
EST: gi|18459586|gb|BM437864.1|BM437864
EST:     TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAG                         GGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
genomic: TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaat ... tgtggggcagGGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
EST: gi|33405732|gb|CF211359.1|CF211359
EST:     TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAG                         GGTCAATGGAATCCAGAGGATTTATTGNAGTTGCTGCAGAGCCCACCTTTT
genomic: TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaat ... tgtggggcagGGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
EST: gi|110391622|gb|EC956610.1|EC956610
EST:     TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAG                         GGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
genomic: TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaat ... tgtggggcagGGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
EST: gi|351028718|gb|FQ433148.1|FQ433148
EST:     TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAG                         GGTCAATGGAATCCAGAGGATTTATTGGA
genomic: TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaat ... tgtggggcagGGTCAATGGAATCCAGAGGATTTATTGGA
EST: gi|22011495|gb|BQ796529.1|BQ796529
EST:     TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAG                         GGTCAATGGAATCCAGAGGATTTATTGGAGTTGCT
genomic: TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaat ... tgtggggcagGGTCAATGGAATCCAGAGGATTTATTGGAGTTGCT
EST: gi|110377829|gb|EC942921.1|EC942921
EST:     TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAG                         GGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT
genomic: TGATTGAGACATTACCAATGGAACAACGTTTAGCCTCTTACTTACCTGAGgtattgcaat ... tgtggggcagGGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTT