1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GATCTATTACTGCAATGATTTTGATGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATGgtaaattgaaattgtacatcgttttatgagaaagcatcttctatttgcttattctgtaggactcatggtcatgttgtacattgattaaatatgataattt...
species | Vitis vinifera |
transcript | Vv11s0016g03660.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATG GCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGAEST: gi|110715750|gb|EE094159.1|EE094159
genomic: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATGgtaaattgaa ... gattaatcagGCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGA
EST: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATG GCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGAEST: gi|110399825|gb|EC966355.1|EC966355
genomic: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATGgtaaattgaa ... gattaatcagGCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGA
EST: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATG GCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGAEST: gi|110409716|gb|EC975386.1|EC975386
genomic: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATGgtaaattgaa ... gattaatcagGCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGA
EST: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATG GCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGAEST: gi|110406856|gb|EC972443.1|EC972443
genomic: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATGgtaaattgaa ... gattaatcagGCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGA
EST: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATG GCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGAEST: gi|161711472|gb|FC058674.1|FC058674
genomic: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATGgtaaattgaa ... gattaatcagGCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGA
EST: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATG GCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGA
genomic: TGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATGgtaaattgaa ... gattaatcagGCAGTAGCAATGTCTGTACAAGTAGCTGGTGCGAGTTCTTTTATATCAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTATTACTGCAATGATTTTGATGGATAAACTAGGGAGGAAGGCCCTCCTTGTTTGGAGCTTCTTTGGCATGgtaaattgaaattgtacatcgttttatgagaaagcatcttctatttgcttattctgtaggactcatggtcatgttgtacattgattaaatatgataattt
- - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaag