Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGAATTTGATTACATATTTGATTGGACAATCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCTgttcgtatctccactatttggctctgcttttactatttacattgaatcacttctaggattatttgtgttatagcttgttgtagttatatttggtactagcaagctacccttacaaataattttaaagcactcttcgtattgttcatgattctgacaaggatcaatatccaaattttacag

Basic information

species Vitis vinifera
transcript Vv11s0016g03460.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32265262|gb|CD716851.1|CD716851
EST:     CCTGAAGTACCAGCAAACCCAGAAGAGTAGAAACTCA-CCTCAATTATCT                         CCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
genomic: CCTGAAGTACCAGCAAACCCAGAAGAGTAGAA-CTCAACCTCAATTATCTgttcgtatct ... aattttacagCCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
EST: gi|33409662|gb|CF215289.1|CF215289
EST:     TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCT                         CCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTGGATAGG
genomic: TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCTgttcgtatct ... aattttacagCCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
EST: gi|33409255|gb|CF214882.1|CF214882
EST:     TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCT                         CCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTGGATAGG
genomic: TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCTgttcgtatct ... aattttacagCCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
EST: gi|110711458|gb|EE087963.1|EE087963
EST:     TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCT                         CCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
genomic: TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCTgttcgtatct ... aattttacagCCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
EST: gi|294967224|gb|GW840099.1|GW840099
EST:     TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCT                         CCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
genomic: TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCTgttcgtatct ... aattttacagCCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
EST: gi|45770598|gb|CN006450.1|CN006450
EST:     TCCTG-AGTACCAGC-AACCCAGAAGAGTAG-ACTCNACCTCAATTATCT                         CCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTGGATAGG
genomic: TCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCTgttcgtatct ... aattttacagCCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
EST: gi|27586446|gb|CB009141.1|CB009141
EST:     GTAGAACTCAACCTCAATTATCT                         CCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG
genomic: GTAGAACTCAACCTCAATTATCTgttcgtatct ... aattttacagCCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATATGAATTTGATTACATATTTGATTGGACAATCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCTgttcgtatctccactatttggctctgcttttactatttacattgaatcacttctaggattatttgtgttatagcttgttgtagttatatttggtactagcaagctacccttacaaataattttaaagcactcttcgtattgttcatgattctgacaaggatcaatatccaaattttacag

- - - - - - - - - - - - - - - - -  CTGAAG