1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGATAAAGGCTTTGGTTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattcttatgaaagattaccttacttcctactccttgccctgagattttttcttattcagaaatgcccccaaaactcttgctttatacttcccaaaa...
species | Vitis vinifera |
transcript | Vv11s0016g00700.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAG TGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTTEST: gi|83274977|gb|DV939073.1|DV939073
genomic: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattctt ... tgttttacagTGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTT
EST: AGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAG TGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTTEST: gi|110384421|gb|EC948856.1|EC948856
genomic: AGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattctt ... tgttttacagTGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTT
EST: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAG TGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTTEST: gi|110685604|gb|EE062468.1|EE062468
genomic: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattctt ... tgttttacagTGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTT
EST: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAG TGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTTEST: gi|110393146|gb|EC958145.1|EC958145
genomic: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattctt ... tgttttacagTGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTT
EST: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAG TGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTTEST: gi|110685748|gb|EE062738.1|EE062738
genomic: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattctt ... tgttttacagTGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTT
EST: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAG TGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTTEST: gi|110391803|gb|EC956805.1|EC956805
genomic: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattctt ... tgttttacagTGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTT
EST: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAG TGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTT
genomic: TGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattctt ... tgttttacagTGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATAAAGGCTTTGGTTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGgttcattcttatgaaagattaccttacttcctactccttgccctgagattttttcttattcagaaatgcccccaaaactcttgctttatacttcccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccaa