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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTGACATGCTTGAGGTAGGAAATGGGGGAATGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcctgaaatttccttcttttgcacatggatgccttctttcccagagtctgcttgctaaccaactgaggtaacattgcag

Basic information

species Vitis vinifera
transcript Vv10s0071g01100.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g01100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA18G44820.1 (Glycine max), 5'ss of exon 11
-ATCCTGACATGCTTGAGGTAGGAAATGGGGGAATGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcctgaaatttccttcttttgcacatggatgccttctttcccagagtct-----gcttgctaaccaactgaggtaacattgcag------------
 ||||||| ||||||||||| |||||||| || ||||| ||  ||||||| || || ||||||||  |||||||  ||||||||||    | ||   |||   || |||| ||      ||  || | |   ||  | |     ||||  |  ||   |       ||| |||             
GATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtac--tactattattcttttgttttccaacatactgatttatgttaaagcatgtacaaggctttttttcctttttttccctcat-gcaaaggtttattgca

upper sequence: Vv10s0071g01100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G40990.1 (Glycine max), 5'ss of exon 11
ATCCTGACATGCTTGAGGTAGGAAATGGGGGAATGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcctgaaatttccttctttt---------------------gcacatggatgccttctttcccagagtctgcttgctaaccaactgaggtaacattgcag
||||||| ||||||||||| |||||||| || ||||| ||  ||||||| |  || ||||||||  |||||||  ||||||||||       | |   ||   | ||                       ||| ||  | | ||| |||||     |||  ||  |   ||    | |    |||||||
ATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttttattcttttgttttccaatatactgatttatgttaaagcatatataaggcttttttcctt---tcttttttttcctcatgcaaaggtttattgcag

upper sequence: Vv10s0071g01100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G08380.1 (Arabidopsis thaliana), 5'ss of exon 11
ATCCTGACATGCTTGAGGTAGGAAATGGGGGAATGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcctgaaatttccttcttttgcacatggatgccttctttcccagagtctgcttg---ctaaccaactg-aggtaacattgcag
| || || |||||||| || |||||||| || ||||| || || || ||||||||||| |||||||||||||| || || |||||  | |    | ||| ||    |    | |       |      |  | | |  |  ||   | ||  |  |  |  || || |||||
ACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaagctat--atattcccgaaatagagaaactctcttcaaacaacatatattaagtctgaaaccaatgatgtatatatatcactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702413|gb|EE081097.1|EE081097
EST:     TGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAG                         GCTCCCTTACTCATTGGTTGTGACGTGAGAAACACAACAAAAGAAACACTA
genomic: TGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcct ... aacattgcagGCTCCCTTACTCATTGGTTGTGACGTGAGAAACACAACAAAAGAAACACTA
EST: gi|34362870|gb|CF404455.1|CF404455
EST:     TGACTAATGATGAATACATAGTNCACTTCAGCATATGGGCTATTTCCAAG                         GCTCCCTTACTCATTGGTTGTGACGTGAGAAACACAACAAAAGAAACACTA
genomic: TGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcct ... aacattgcagGCTCCCTTACTCATTGGTTGTGACGTGAGAAACACAACAAAAGAAACACTA