Sequence
atgc intronic sequence ATGC exonic sequenceCTCATCTCCAAGCAAATTCCTCGGGCCCCAGTATAACTCAACAATGTTTCCAACTTTTGGAGGTGGCGTGCTGTGTGCCAAAGCATCAATGCTGCTACAGgtacatagaaagtctagacaaccttgtaaggtctattgatagtgaatgtatgctaatttgtggatgtccaacttctgttttatctctcaatgccaccccacaaatattatttgaatcttctgggttaacatcactattgaaatatttgatatatccatatctgactgtttatttgaatctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 11
CTCATCTCCAAGCAAATTCCTCGGGCCCCAGTATAACTCAACAATGTTTCCAACTTTTGGAGGTGGCGTGCTGTGTGCCAAAGCATCAATGCTGCTACAGgtacatagaaagtctagacaaccttgtaaggtctattgatagtgaatgtatgctaatttgtggatgtccaacttctgttttatctctcaatgccaccccacaaatattatttgaatcttctgggttaacatcactattgaaatatttgatatatccatatctgactgtttatttgaatctgcag
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CTCGTCTCCCAACAAGTTTTTCGGTTCCCATTACAATACATCAATGCTTCCAGCATTTGGAGGTGGGGTCATGTGTGCCAAGGCATCAATGCTGCTACAGgtactt------ctcagaccaatctatgtgactctagtatagtagcagca-atcaattccaagaactcctcctccttgttcccccat--gtcccaacttgctagaatcttctggatttttggagtgtttatcttcattatactcaattataaaacggtggtctgcag-----------------
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 11
CTCATCTCCAAGCAAATTCCTCGGGCCCCAGTATAACTCAACAATGTTTCCAACTTTTGGAGGTGGCGTGCTGTGTGCCAAAGCATCAATGCTGCTACAGgtacatagaaagtctagacaaccttgtaaggtctattgatag-tgaatgtatgctaatttgtggatgtccaacttct---gttttatctctcaatgccacccca-caaatattatttgaatcttctgggttaacatcactattgaaatatttgatatatccatatctgactgtttatttgaatctgcag
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CTCATCTCCCAACAAGTTTTTCAGTTCCCATTACAATACATCAATGCTTCCCGCATTTGGAGGTGGGGTCTTGTGTGCGAAAGCATCAATGCTGCTACAGgtacttctcagacc-aatctatgtggaaattatcattgttctctaaattaactctagtattgtagcaatcaattccgagaattcttcctcctagtgtccccacgtcccaacttgctagaatcttctggattt-tgtaattgttcatcttcattatac-ttaattacaaaatggtggtctgcag------
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 11
CTCATCTCCAAGCAAATTCCTCGGGCCCCAGTATAACTCAACAATGTTTCCAACTTTTGGAGGTGGCGTGCTGTGTGCCAAAGCATCAATGCTGCTACAGgtacatagaaagtctagacaaccttgtaaggtctattgatagtgaatgtatgctaatttgtggatgtccaacttctgttttatctctcaatgccaccccacaaatattatttgaatcttctgggttaacatcactattgaaatatttgatatatccatatctgactgtttatttgaatctgcag
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CTCATCTCCAAACAAATTTTTGGGCTCCAATTACAACGCATCAATGTTTCCAGCATTTGGAGGTGGGGTCTTGTGTGCCAAGGCATCAATGCTCCTGCAGgtacctgaaacaattctatgggctc---aggcataatgttaataa-----tattaatatatac-tattcaaaatttgtctttttgtttccta--atttgctaagcatcttctaaattttcatcataatcatctcttgtacaatgtttc-----tctacag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30256255|gb|CB972098.1|CB972098EST: CAACTTTCGGAGGTGGCGTGCTGTGTGCCAAAGCATCAATGCTGCTACAG AATGTTCCTCCTGCTTTACTTGTTCGATTCCTGAGAGAACACCGTTCTGAG
genomic: CAACTTTTGGAGGTGGCGTGCTGTGTGCCAAAGCATCAATGCTGCTACAGgtacatagaa ... gaatctgcagAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAACACCGTTCTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCATCTCCAAGCAAATTCCTCGGGCCCCAGTATAACTCAACAATGTTTCCAACTTTTGGAGGTGGCGTGCTGTGTGCCAAAGCATCAATGCTGCTACAGgtacatagaaagtctagacaaccttgtaaggtctattgatagtgaatgtatgctaatttgtggatgtccaacttctgttttatctctcaatgccaccccacaaatattatttgaatcttctgggttaacatcactattgaaatatttgatatatccatatctgactgtttatttgaatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT