1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTGGAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttgttctgcattataacctaagttcagtcaaaattaaaatcaaagatggtttaaaagaatttaaaatttttgcttagtttgttgcttatatgc...
species | Vitis vinifera |
transcript | Vv10s0003g00300.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|110705533|gb|EE082491.1|EE082491
genomic: TGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|46910969|gb|CN546344.1|CN546344
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|28965272|gb|CB344305.1|CB344305
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATTCGATCATGGACATGAAGGGCATCTTEST: gi|110388308|gb|EC953043.1|EC953043
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|110376459|gb|EC941524.1|EC941524
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|349829387|gb|FQ419919.1|FQ419919
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|351031379|gb|FQ445404.1|FQ445404
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|110363008|gb|EC926573.1|EC926573
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|22013243|gb|BQ798277.1|BQ798277
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|349813488|gb|FQ413722.1|FQ413722
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GGGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|110361951|gb|EC925457.1|EC925457
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|71883070|gb|DT032125.1|DT032125
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|28965323|gb|CB344356.1|CB344356
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|32244911|gb|CD710730.1|CD710730
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|30252957|gb|CB970508.1|CB970508
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|110426800|gb|EC993222.1|EC993222
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|30131378|gb|CB916717.1|CB916717
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTTEST: gi|34542626|gb|CF510858.1|CF510858
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
EST: AGTGGCAATGTACTCTTTCATAAAGGG-ATCGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGATCNATACGATCATGGACATGAAGGGCEST: gi|33401641|gb|CF207268.1|CF207268
genomic: AGTGGCAATGTACTCTTTCATAAAGGCCAA-GATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGC
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATC-GATATGAGAGGAATACGATCATGGACATGAAGGGCATCTEST: gi|110389432|gb|EC954269.1|EC954269
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGC-ATGAGAGGAATACGATCATGGACATGAAGGGCATCT
EST: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGA CAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
genomic: GAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttg ... tcttttgcagCAACTGAAATCAGCATGAGAGGAATACGATCATGGACATGAAGGGCATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTGGAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGAgtgagttttgttctgcattataacctaagttcagtcaaaattaaaatcaaagatggtttaaaagaatttaaaatttttgcttagtttgttgcttatatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa