Sequence
atgc intronic sequence ATGC exonic sequenceAGGAACTACCAAAAAGACTATAACAAAAAGGGCTCTAAAGGCATCCGGTCAATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataaaatttcagaccttccagcttatgaatttttctttctccaaataattttgcatattcaatgcataagtgcataacatgtggtccaattttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 12
AGGAACTACCAAAAAGACTATAACAAAAAGGGCTCTAAAGGCATCCGGTCAATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataaaatttcagaccttccagcttatgaatttttctttctccaaataattttgcatattcaatgcataagtgcataacatgtggtccaattttt---------
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AGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTGAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCTCAAAAGACCTTCTCCTAATGCACAAAgtaatt-tgccatttt-gatctttgaacatgttattgttcatttgttc------ttttgggcaaatgaagtcca-gtgctaatcatgtttttgaatttgttgcatatgt
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 14
AGGAACTACCAAAAAGACTATAACAAAAAGGGCTCTAAAGGCATCCGGTCAATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaat---cataaaatttcagaccttccagcttatgaatttttctttctccaaataattttgcatattcaatgcataagtgcataacatgtggtccaattttt
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GGGAACAACTAAAAAGACTATAACAAAAAGGGCTTTAAAAGCGTCTGGTCAGTCAGATCTCTCAGGAAATGCCTCAAAGGACCTGCTCCTTATGCACAAAgtaattcactaataaacatgtataatacaaatagttatgttctcttggtaaatgagatcccttgcaagtcatttttaagttctttggatatgccatacta---
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 12
AGGAACTACCAAAAAGACTATAACAAAAAGGGCTCTAAAGGCATCCGGTCAATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataaaatttcagaccttccagcttatgaatttttctttctccaaataattttgcatatt-caatgcataagtgcataacatgtggtccaattttt-
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GGGAACAACTAAAAAGACTATAACAAAAAGGGCTTTGAAAGCGTCTGGTCAGTCAGATCTTTCAGCAAATGCCTCAAAGGACCTGCTCCTTATGCACAAAgtaatt-cactattatacatgtat-aataaacatagttttgttttcttggttaatgagatcccttgcaagtcatttttaagttttttgaatacatattatat
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 13
AGGAACTACCAAAAAGACTATAACAAAAAGGGCTCTAAAGGCATCCGGTCAATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataaaatttca--gaccttccagc--ttatgaatttttctttctccaaataattttgcatattcaatgcataagtgcataacatgtggtccaattttt--
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AGGAATGCTCAAGAAAACCATTACTAAAAGGGCTCTAAAAGCTTCTGGTCAGACTGATCTATCTGGGAATGCTTCCAAGGATCTGCTTCTAATGCATAGAgtaatattttctttctatgaatattgcttcctttttgtatatatttttttctcatttgttttgtttttcttgttaatca-tattcacctgttttaccgattcccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34549540|gb|CF517772.1|CF517772EST: AATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAA CTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTG
genomic: AATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataa ... tcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAACTACCAAAAAGACTATAACAAAAAGGGCTCTAAAGGCATCCGGTCAATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataaaatttcagaccttccagcttatgaatttttctttctccaaataattttgcatattcaatgcataagtgcataacatgtggtccaattttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataa