Sequence
atgc intronic sequence ATGC exonic sequenceGGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGGgtgtagactccttcctccttgatactgtccctctcttttttgcttttaagttcattttataaattttcctaatcataatcaattcccctccccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G44910.2 (Glycine max), 5'ss of exon 11
GGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGGgtgtagactccttcctccttgatactg-tccctctcttttttgcttttaagttcattt---tataaattttcctaatcataatcaattcccctccccag------
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TGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGACGCCAGCAGAGCAGGAGGCAATTGGAAGGgtat-gtctcttatatttttaagtctgatatttttgctcatttcatttccactgacttatccattagcttcatatgtgctgattgattttacttatgatacatag
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA07G00490.1 (Glycine max), 5'ss of exon 11
GGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGGgtgtagactccttcctccttgatactgtccctctcttttttgcttttaagttcattttataaattttcctaatcataatcaattcccctccccag
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TGATATGTTTGAGCAGCCTGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGgtatgtcaatgtcactcctttttgtagtctaa---taatatacgtgtcattgcgattttcattcctgctgattgatttttacttattattcgtag
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G23930.1 (Glycine max), 5'ss of exon 12
GGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGGgtgtag-actccttcctccttgatactgtccctctcttttttgcttttaagttcattt-tataaatt--ttcctaatcataatcaattcccctccccag
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AGATATATTTGAGCAGCCCGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCGGAGCAGGAGGCAATTGGAAGGgtatgtcactccttcttgtcgtctaatatacgtgccgttgccattttcattttcatttctgctgattgatttttacttattattcgtag----------
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G00430.1 (Glycine max), 5'ss of exon 7
GGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGGgtgtagactccttcctccttgatactgtccctctctt-ttttgctttta--agttcattttataaattttccta-atcataatcaattcccctccccag------
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TGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCTATCAATGTGACGCCAGCGGAGCAGGAGGCAATTGGAAGGgtat-gtctcttatatttttaagactgatatttgctcattttatttccactgacttatccattagcttcatatatgtgctgattgattttacttattatacatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71869952|gb|DT019007.1|DT019007EST: TGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGG CTTGAGGCAATGGGATTTGACAGAGCTCTTGTCATTGAGGCATTCTTAGCT
genomic: TGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGGgtgtagactc ... ccctccccagCTTGAGGCAATGGGATTTGACAGAGCTCTTGTCATTGAGGCATTCTTAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTACTCCAGCAGAGCAGGAGGCTATTGAGCGGgtgtagactccttcctccttgatactgtccctctcttttttgcttttaagttcattttataaattttcctaatcataatcaattcccctccccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG