Sequence
atgc intronic sequence ATGC exonic sequenceGTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatttcattattttgctttgctttggtgtggtttcatgtcctttgctcccacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagtt-gactgtcttctggcattatttaattttttctatggtgctttatttcatta-ttttgctttgctttggtgtg-gtttcatgtcctttgctcccacc
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GTTACAGATGGGGAAAGATTGCCATTGGCTGTTAAAGAATTAGGAAGTTGTGATCTTTACCCACAGgtatttttgaatgtcacaactcacaacgctctttatattttact-cctgatactgttagcagtgctgcagtaacctatgtgtttgaacttctgcataaata--
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 2
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttga--ctgtcttctggcattatttaattttttctatggtgctttatttcattattttgctttgctttggtgtggtttcatgtcctttgctcccacc
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ATTGCAGATGGTGAGCGCTTACCCTTAGCTGTGAAGGAGTTGGGAACCTGTGATCTTTATCCACAAgtatgttcatattttctatttaaatgaatgcatcattcgcatagtgatcaagt--gatgttttccaccagaaccaacttgatgcttgcaaatgagtcccaaa
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttga--ctgtcttctggcattatttaattttttctatggtgctttatttcattat--tttgctt--tgctttggtgtg-gtttcatgtcctttgctcccacc
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ATTGCAGATGGTGAGCGCTTACCCTTGGTTGTGAAGGAGTTGGGAACCTGTGATCTTTATCCACAAgtaagttcatatttgctatttaaacgaatgcatcattcgcatattgatgttttccaatagaaccaacttgatgcttgcaaatgagtcccaagtttctttt-------
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatt-tcattattttgctttgctttggtgtggtttcatgtcctttgctcccacc----
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GCCACAGATGGAGAAAGATTACCCTTGGCTGTAAAAGAGTTAGGAAGCTGTGATTTGTACCCACAGgtactt---ctggatgctgctat-gttctttgtattctaaaatttgttactattgtaggtttatagtgtagttat-caattggatatttttttccttttttattt
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatttcattattttgct--ttgctttgg-tgtggtttcatgtcctttgctcccacc---
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ATCGCAGATGGTGATCGGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttac------ctatgatagaatggatgcttcaattgtgatcttcatcatgactcaactaaatgcttgaaacttagttctattttctttttaatgtccaaa
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgac-tgtcttctggcattatttaattttttctatggtgctttatttcattattttgctttgctttggtgtggtttcatgtcctttgctcccacc--
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GTTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCCCAAgtgagttaatatacttcttaatattttgttgcattctttttcatagcttattt-att--tttaattatttttgctctcatcatgcaaaacttgacaaagttag
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattat-ttaattttttctatggtgctttatttcattattttgctttgctttggtgtggtttcatgtcctttgctcccacc
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ATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCTCAAgtgagtgaacatcctttttccgtaatattaagtcacattcttttgcattacttctctatattttatcatttatgc-tcatattatgtgatagggacttagg
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattat-ttaattttttctatggtgctttatttcattattttgctttgctttggtg-tggtttcatgtcctttgctcccacc
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ATTGCTGATGGAGAAAGGCTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAgtgagtgaacatcccttttccttgatgttaagtcacattcttttgcattacttctctattttttttatcatttatgctcacatcatgtgatagggacttg--
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgac-tgtcttctggcattatttaattttttctatggtgcttt-atttcattattttgctttgctttggtgtggtttcatgtcctttgctcccacc
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GTTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGTACCTGCGATCTCTACCCTCAAgtgagttaatgtagttcttaatattatttgcattcttttgcatagctttcgtatttttaattatttttgctctcattatgcaaaactcgacaaagttaga--
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatttcattattttgctttgctttggtgtggtttcatgtcctttgctcccacc----
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GTTACTGATGGAGAAAGGTTGCCCTTGAGTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagtg---ttactacagcactcggtccaatgattttatgatgttgtggcttattatatag-ttcatttcggaaaaacattttctgcgttgctggtatgattg
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 11
--------------------GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatt-tcattattttgctttgctttgg---tgtggtttcatgtcctttgctcccacc
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CTTTCATCTCTCTACCTTAGGCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagc--gttactatccagcacctttgaaactttcctgttgtgttgaattatcattggatcttttggggtaaacactttcggtgcatgtccc--acttaaatg
upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 11
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatt-tcattattttgctttgctt---tggtgtggtttcatgtcctttgctcccacc
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GCTACTGATGGAGAAAGACTTCCCTTGTCTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAgtgagc--gttactatccagcacctttgaaactttcctgttgtgttgaattatcattggatcttttggggtaaacactttcggtgcatgtccc--acttaaatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351030017|gb|FQ430759.1|FQ430759EST: GATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAA AGCCTAAAACATAACCCAAATGGGAGGTTTGTTGTCGTTTGTGGAGATGGT
genomic: GATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgac ... tgtgtttcagAGCCTAAAACATAACCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatttcattattttgctttgctttggtgtggtttcatgtcctttgctcccacc
- - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccac