Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAAATCGACCAATCTGATGCCATAAATTTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgtagtaaagttcagtgtttatcttcttgttcttccgtctgatcattgctgttgtcattattatcattatcatcagcaatattattattatcattatcaacattattattgttggtgctagaacttatatcaccatttttctcttag

Basic information

species Vitis vinifera
transcript Vv09s0002g02530.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G015289_T01 (Zea mays), 5'ss of exon 10
GAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAAATCGACCAATCTGATGCCATAAATTTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgtagtaaagttcagtgtttatcttcttgttcttccgtctgatcattgctgttgtcattattatcattatcatcagcaatattattattatcattatcaacattattattgttggtgctagaacttatatcaccatttttctcttag
 |  ||||||||||||||||||||||||| || || ||||| || ||||||   || ||  |     |    || || ||||| ||  | ||  | ||| |||  ||  ||     | | || | |   | ||| || |        |||||   ||| ||||  |||||||  ||   ||||  ||     ||  ||||   |                                          
CAGCGGTGTGATGTTGCATTTCCTTGTGCATCACATAATGAGATTGACCAAGGGGAGGCTGTTGCAATCAGCAACTCTGGTTGTCGTGTTCTTGTCGAATgtacgaagttttgaattctgtcatttcaattttctgttt--------ctgtttaaatttttatatttatcatatgctg-attaaaata--tgttgccaactgcag-----------------------------------------

upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G20930.2 (Glycine max), 5'ss of exon 12
GAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAAATCGACCAATCTGATGCCATAAATTTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgtagtaaagttcagt-gtttatcttcttgttcttccgtctgatcattgctgttgtcattattatcattatcatcagcaatattattattatcattatcaacattattattgttggtgctagaacttatatcaccatttttctcttag
||||||||||||||||||||| | |||||||| ||||||||||| || |||||||||||||| |||||||| ||||| |||||||| |||||| |||||||||||   |||| |  |  |    | ||| | |||   ||  ||  | ||    || | ||    | ||     ||| |  || ||| | ||| |  ||                                                
GAAAGGTGTGATGTTGCATTTGCCTGTGCTTCACAGAATGAAATTGATCAATCTGATGCCATTAATTTGGTTAATTCTGGTTGCCGTATACTAGTAGAAGgtagtt--gttctgcaggatgcaatattggttttcttcctcctc--tact----tcctcatatatactaatggaagctaattttttaatttcaatcccag-----------------------------------------------

upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA07G01510.2 (Glycine max), 5'ss of exon 12
GAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAAATCGACCAATCTGATGCCATAAATTTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgtagtaaagttcagtgtttatcttcttgttcttccgtctgatcattgctgttgtcattattatcattatcatcagcaatattattattatcattatcaacattattattgttggtgctagaacttatatcaccatttttctcttag
||||||||||||||||||||| ||||| |||| ||||||||||| || |||||||||||||| |||||||| ||||||||||| || |||||| |||||||||||         ||||  |  |    | |     | || |  ||    |  || | ||    | ||     ||| |  || ||| | | | |  ||                                                
GAAAGGTGTGATGTTGCATTTGCTTGTACTTCACAGAATGAAATTGATCAATCTGATGCCATTAATTTGGTTAATTCAGGTTGTCGTATACTAGTAGAAGgtagt---------tgttc-ttgtaggatgcaatattttggtttttttcctcttcctcatatatactaatggaagctacctttttaatttgaatcccag-----------------------------------------------

upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G28010.1 (Glycine max), 5'ss of exon 3
GAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAAATCGACCAATCTGATGCCATAAATTTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgtagtaaagttcagtgtttatcttcttgttcttccgtctgatcattgctgttgtcattattatcattatcatcagcaatattattattatcattatcaacattattattgttggtgctagaacttatatcaccatttttctcttag
||||||||||||||||||||| ||| |||||| ||||||||||| || |||||||||||||| |||||||| ||||||||||| || |||||| ||||||||||      |    |  |    | ||| | ||    ||  || |     || |   |||  | ||       |    | |  ||   ||||                                                      
GAAAGGTGTGATGTTGCATTTGCTTATGCTTCACAGAATGAAATTGATCAATCTGATGCCATTAATTTGGTTAATTCAGGTTGTCGTATACTAGTAGAAGgtagctgttcttgtaggatgcaatattggtttttttcctcctcttcttccttata--tatacttatggaagctacttgtttagtttgaatcacag---------------------------------------------------

upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G32870.1 (Glycine max), 5'ss of exon 3
---------------------------------GAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAAATCGACCAATCTGATGCCATAAAT-----TTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgta--gtaaagttcagtgtttatcttcttgttcttccgtctgatcattgctgttgtcattattatcattatcatcagcaatattattattatcattatcaacattattattgttggtgctagaacttatatcaccatttttctcttag
                                 ||||||||||||||||||||| |  ||||||| ||||||||||| || || ||||||||||| | |     ||||| ||||||||||| || |||||| |||||||||  |||   | || | ||  | |  || ||| ||| | |  || |               |||  ||||    ||| |  |  ||||| | | |  ||                                                
TCCAGATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCAGGTGCTTCACAGAATGAAATTGATCACTCTGATGCCATTATTGgtttttggttaattcaggttgtcgtatactagtagaaggtattgtaggatgcaatatt-gtttattttttcctccttttcttcctcata-----------tatacttatgga-agctacttgtttattttgaatcacag-----------------------------------------------

upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G51720.1 (Arabidopsis thaliana), 5'ss of exon 12
GAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAAATCGACCAATCTGATGCCATAAATTTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgtagtaaagttcagtgtttatcttcttgttcttccgtctgatcattgctgttgtcattattatcattatcatcagcaatattattattatcattatcaacattattattgttggtgctagaacttatatcaccatttttctcttag
|||||||||||||| ||||||||||||||||||||||||||| | || ||| | |||||||| ||| |||| ||| |||| |||||  ||||  ||||||||||  |  |    | |  | |  ||  ||     | ||     ||  ||||  | |||   |  ||    |      | |||   ||||| | | ||  ||   | || || ||||                             
GAAAGGTGTGATGTGGCATTTCCTTGTGCTTCTCAGAATGAAGTTGATCAAGCGGATGCCATTAATCTGGTCAATGCAGGATGCCGTTTACTGGTAGAAGgtagagatttcttatatcaagcaact-atttcagggcctctcgttttgtgtttacgttag-gtttttgctgttcttt-tgttacc-ttatcctaagcagtatggatgttttttgtgcag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110374522|gb|EC939340.1|EC939340
EST:     ATCTGATGCCATAAATTTGGTAAATTCAGGTTGCCGGATACTAATAGAAG                         GTTCAAACATGCCCTGTACCCCTGAAGCAGTTGATGTTTTGAGAAAAGCGA
genomic: ATCTGATGCCATAAATTTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgtagtaaagt ... tttctcttagGTTCAAACATGCCCTGTACCCCTGAAGCAGTTGATGTTTTGAGAAAAGCGA