Sequence
atgc intronic sequence ATGC exonic sequenceTGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatgttttacttatccctatatcctaagctgcaaagcatttttggttttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G153393_T01 (Zea mays), 5'ss of exon 11
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtaca-tatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatgttttacttatccctatatcctaag--ctgcaaagcatttttggttttt---
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TGCAGATCTACAGATGGCAACAGATAGCTTTAGCTTCGACAACCTTGTTGGAGAGGGTACTTTTGGACGTGTTTACAGGGCACAATTCAATGATGGAAAGgtatgctatatatctt-catgtcacaattcatatg-tgtt----tcccacaaaagttttcttgacttgtgtctttaagatcttcgaaaccaggactaatatcttta
upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G330907_T01 (Zea mays), 5'ss of exon 11
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtaca-tatttgtt-taatatttttcatgt-tgcatgctgctgtagtgtcatgcatgttttacttatccctatatcctaagc--tgcaaagcatttttggttttt
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TGCAGATCTACAGATGGCAACAGATAGCTTCAGCTTCGATAACCTTGTTGGAGAGGGTACTTTTGGACGTGTTTACAGGGCACAGTTCAATGGTGGAAAGgtatgctatatatcctcatgtgcacaattcctatgtgtttccaaaggtacacggaagttttcttgacttgtgcctttaaggtctttgaaaccaggactaa-----
upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G004572_T01 (Zea mays), 5'ss of exon 11
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatg-ttttacttatccctatatcctaagctgcaaagcatttttggttttt
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TGCTGACCTACAGATGGCAACAGATAGCTTCAACATGGACAACCTTATTGGAGAGGGTACTTTAGGACGTGTGTACAAGGCACAATTTAGTGATGGAAAGgtaaagaactatgagttaccaataatgtgttattcaattcttttgataagaaagattggactaaaatatattgaaccagttgcacaa-atgaaaaattgga
upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA07G05230.1 (Glycine max), 5'ss of exon 11
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatgttttacttatccctatatcctaagctgcaaag---catttttggttttt
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AGCTGACCTGCAGATTGCTACTGGATCCTTCAGTGTGGAGCAACTTCTTGGTGAGGGGTCTTTTGGACGTGTATACCGTGCTCAATTTGATGAGGGAAAGgtat-tccttacctgttgtttgctgcaa-atacacctctata-tctaatgctggtagcagagatatataattccaaaatagaattgtcacattatataatttt
upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G42360.1 (Glycine max), 5'ss of exon 11
---TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatatttgtttaatatttttcatgttgcatgctgctgtagtgtcatg-catgttttacttatccctatatcctaagctgcaaagcatttttggttttt------------------------------------------------------------------------
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TATTGCTGAACTGCAGATTGCTACTGGCAGCTTCAGTGTGGATCACCTTGTTGGTGAGGGGTCTTTTGGGCGTGTATACCATGCTCAATTTGATG---GACAGgtattt-cttaaccactattcctgttatttca--ctgtctgattccaacgacaagtattagt-atacccagattagtgtcttgttattatttaaatttccctggaagtggatcaaatttgaatagtatctatatgctagcgtatggatgcatgcattgatgatatgaaataag
upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA19G45130.1 (Glycine max), 5'ss of exon 11
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtac------atatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatgttttacttatcccta--tatcctaagctgcaaagcatttttggttttt
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TGCTGAACTGCAGATTGCTACTGGCAGCTTCAGTGTGGATCACCTTGTTGGCGAGGGATCTTTTGGGCGTGTTTACCGTGCTCAATTTGATGATGGACAGgtattcctggaatttcactgtctgattccaatgacaagtattagtatacccagattagtgtcatgttattatttaattttccctggaagtggatcaaatc--------
upper sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G01790.1 (Glycine max), 5'ss of exon 11
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatgttttacttatccctatatcctaagctgcaaag---catttttggttttt
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AGCTGACCTCCAGATTGCTACTGGAAGCTTCAGCGTGGAGCAACTTCTTGGTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtat-tccatacctgttgtttgctgtaa-atacacctctata-tctaatgctggtagcagagatatgtaattccaaaatagaattgtcacattatataattttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110701239|gb|EE078596.1|EE078596EST: GTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAG GTTGTTGCTGTCAAGAAAATAGATTCATCTGCTCTCCCCGATCAATTTTCT
genomic: GTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatattt ... aatgttgtagGTTGTTGCTGTCAAGAAAATAGATTCATCTGCTCTCCCCGATCAATTTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatgttttacttatccctatatcctaagctgcaaagcatttttggttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA