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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGCCCTCTACAGACTATATGGTGAGGCAGAAGAAGAACGTGACTTCTTTTCTTCTACAAATGCTACTTCTGTATATGATATGTTTCTTCTGACTGTGgtatgaactctgtttatttttttacttgtccttctgcaaaagatatattctaaggaatctctttctgtgcag

Basic information

species Vitis vinifera
transcript Vv08s0105g00330.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00330.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G30320.1 (Glycine max), 5'ss of exon 14
GCGTGCCCTCTACAGACTATATGGTGAGGCAGAAGAAGAACGTGACTTCTTTTCTTCTACAAATGCTACTTCTGTATATGATATGTTTCTTCTGACTGTGgtatgaactctgtttatttttttacttgtccttctgcaaaagatatatt---ctaaggaatctctttctgtgcag
||||| |||||||||| ||| ||||||||| ||||| || | ||||||||||||||| |||| |||  ||||||||||||| |  || || || || ||||| ||  | || |||||| ||    |||||| |  ||||   ||   ||   ||   |  |  |||    |||||
GCGTGTCCTCTACAGATTATTTGGTGAGGCTGAAGAGGAGCCTGACTTCTTTTCTTCCACAACTGCAGCTTCTGTATATGAAAAATTCCTACTTACAGTGgtctgtgc-ctctttattcttgattttgtccattagcaaggcatgagttgagcttttggtttacttcaattgcag

upper sequence: Vv08s0105g00330.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G07790.2 (Glycine max), 5'ss of exon 11
GCGTGCCCTCTACAGACTATATGGTGAGGCAGAAGAAGAACGTGACTTCTTTTCTTCTACAAATGCTACTTCTGTATATGATATGTTTCTTCTGACTGTGgtatgaactctgtttatttt--tttacttgtccttctgcaaaagatatatt---ctaaggaatctctttctgtgcag
||||| |||||||||| ||| ||||||||| ||||| || | ||||||||||||||| ||||  ||  ||||||||||||| |  || || || || ||||| ||  | |  ||| | ||  ||   |||||| | |||||   ||  |||   ||   |  || |||    |||||
GCGTGTCCTCTACAGATTATTTGGTGAGGCTGAAGAGGAGCCTGACTTCTTTTCTTCCACAACAGCAGCTTCTGTATATGAAAATTTCCTCCTTACAGTGgtctgtgccccttttttcttgattcttttgtccatttgcaaggcatgaattgagcttttggttcacttcaattgcag