Sequence
atgc intronic sequence ATGC exonic sequenceCGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTgtaagctctccatcattacaacagcaaaatatgaaaatttttacagcccttctgagattggaattcaattgtgatgtccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G34790.1 (Glycine max), 5'ss of exon 11
CGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTgtaag-ctctccat-cattacaacagcaaaatatgaaaatttttacagcccttctgagat----tggaattcaattgtgatgtccag--------------------------
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GGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAACTTGGTTCACAACTCTTCCATCACTCACCACTCTgtaagtctaactacatattagagtttctccttttctatctgtttcctaaacttatgaagaaacatattatctaacaaggattttccacacacttgatcttcaatgtgctgaag
upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G18090.1 (Glycine max), 5'ss of exon 11
CGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTgtaagctctccatcattacaacagcaaaa--tatgaaaatttttacagcccttctgagat----tggaattcaattgtgatgtccag-------------------------
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GGATCTTAGTAACAACTCTTTTGATGCATCGGATGCTCCAACTTGGTTCACAATTCTTCCATCACTCACCACTCTgtaagtctaattacatataagtgtttatccttttctacctgttacctaaacttatgaaataacatacaatctaacaaggattttttccctgcttaacttcaatgtgctgaag
upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G79620.1 (Arabidopsis thaliana), 5'ss of exon 11
CGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTgtaagctctccatcattacaacagcaaaatatgaaaatttttaca----gcccttctgagattggaattcaattgtgatgtccag
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AGATCTCAGCAATAACTCATTTGATCCATCAGAGTCTCCTCTCTGGTTCTCAACCTTACCTTCACTGACCACACTgtaagtgctgctctgctacagtttacaaatcagaacattcacatatgggagctctctaaatatgttactattttcttgtatttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33409248|gb|CF214875.1|CF214875EST: CCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCT GATTCTAGAACATGGATCACTCTATGGGAGTGTGCCACAAAAAGTCTTCAG
genomic: CCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTgtaagctctc ... tgatgtccagGATTCTAGAACATGGATCACTCTATGGGAGTGTGCCACAAAAAGTCTTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTgtaagctctccatcattacaacagcaaaatatgaaaatttttacagcccttctgagattggaattcaattgtgatgtccag
- - - - - - - - - - - - - - - AGAAGC