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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgaggcagagaaaaatccggattagtttttcttttaggattggactgaaattaatgttaggacttaattttaatattgcag

Basic information

species Vitis vinifera
transcript Vv08s0040g01040.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033160|gb|FQ461932.1|FQ461932
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|37188456|gb|CF607805.1|CF607805
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|349827848|gb|FQ422716.1|FQ422716
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|77583953|gb|DV221017.1|DV221017
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351043304|gb|FQ444025.1|FQ444025
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351056246|gb|FQ453708.1|FQ453708
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCCAAACTAATTACAACTCATTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351055541|gb|FQ442337.1|FQ442337
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|110709191|gb|EE084434.1|EE084434
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|34545450|gb|CF513682.1|CF513682
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|110707772|gb|EE084549.1|EE084549
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACATA-TTACAACTCAATCCCACA
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATAC-TAATTACAACTCAGTCCCACA
EST: gi|351053966|gb|FQ441732.1|FQ441732
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|77583880|gb|DV220977.1|DV220977
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCA
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCA
EST: gi|71875979|gb|DT025034.1|DT025034
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAGATCCTCTTAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTAT
EST: gi|110707915|gb|EE084860.1|EE084860
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|349815813|gb|FQ400978.1|FQ400978
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|352789896|gb|FQ478711.1|FQ478711
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCCCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351040753|gb|FQ438297.1|FQ438297
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|349826160|gb|FQ415965.1|FQ415965
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351041354|gb|FQ447481.1|FQ447481
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351040299|gb|FQ425385.1|FQ425385
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|77577309|gb|DV217367.1|DV217367
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351016501|gb|FQ423928.1|FQ423928
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTTATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|349828939|gb|FQ419272.1|FQ419272
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|349824039|gb|FQ417426.1|FQ417426
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351023398|gb|FQ432781.1|FQ432781
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|77580683|gb|DV219246.1|DV219246
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|77578243|gb|DV217899.1|DV217899
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
EST: gi|351022732|gb|FQ428641.1|FQ428641
EST:     CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTT                         ATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT
genomic: CCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgag ... aatattgcagATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTgtgagttgaggcagagaaaaatccggattagtttttcttttaggattggactgaaattaatgttaggacttaattttaatattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA