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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttcatttttttttttattgattatctgttgttgttgtatcgttaatattatttaccttggtttatctattgtccag

Basic information

species Vitis vinifera
transcript Vv08s0040g00430.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g17180.2 (Oryza sativa), 5'ss of exon 11
CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttcatttttttttttattgattatctgttgttgttgtatcgttaatattatttaccttggtttatct--attgtccag
||||  | ||||| |||||||| ||||| || || ||| ||||||||||||| || || || || ||||| ||||||   ||| |||| |||||||||||||     |||    |  |||||       || |||| |   | |    ||  | || |  |  |      ||    |||   |||
CAGAAAAGGATGTCGAGCAGCTCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattccccctgctttttccatcacat-tgttctatctatgcgattgcttttctgaaggtgatccgattcgcatttcgcag

upper sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA05G14170.1 (Glycine max), 5'ss of exon 11
CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttcatttttttttttattgatt--atctgttgttgttgtatcgttaatattatttaccttggtttatctattgtccag------------
| ||| | |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||  | ||||| || | ||| ||||     || || ||||||||  |  |||  ||   || |  |    || ||  ||| |    | |   |||||  |   | ||             
CTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATTTTGGATAATAGAATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAGgtctgcctttatattttttttgttaaattggattcattatattcacttcttttttataaaac-cttctatttattaacgttacaattcatgattcag

upper sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA19G17660.3 (Glycine max), 5'ss of exon 10
CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtt-tcatttttttttttattgatt------------atctgttgttgttgtatcgttaatattatttaccttggtttatctattgtccag
| ||| | |||||||||||||| |||||||| ||||||||||||||  |||| |||||||||||||||||||||||||| || ||||| ||   ||| ||||   |   | || ||||  ||| || | |            ||   |  || || |||    || || || |    |    |||  |  ||||||
CTGAGCATGATGTTGAGCAGCTATTGGTGTCACTGATTTTGGATAATAGAATCCAAGGGCATATTGATCAAGTGAACCGGTTCTTAGAACGCTCTGATAGgtcttgccgttatattttgatttgttaaattaaattcgtcatattcatctttcttttatataaaacataatatttactaacatattcacggtccag

upper sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA19G30100.1 (Glycine max), 5'ss of exon 11
CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttcatttt-----tttttttattga--ttatctgttgtt-gttgtatcgttaatattatttaccttggtttatctattgtccag-------------
| ||| | ||||||||||||||  |||||||||| |||||||||||| |||||||||| || ||||||||||| |||||  | ||||| ||   ||| ||||    ||| || ||       |||||| ||   |||  | || ||  |  | | |||  ||  |     | |   ||  |||   | |               
CTGAGCATGATGTTGAGCAGCTACTGGTGTCGCTTATTTTGGATAACAGAATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGCTCTGATAGgtgagtttttatgttcaattcctttttactggatttagtttttattcataattttgtttgtaaaaaacctcgtatctttactaacattctaaatgcatgttcag

upper sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G00670.1 (Glycine max), 5'ss of exon 11
CAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttcat------ttttttttttattgatt--atctgttgttgttgtatcgttaatattatttaccttggtttatctattgtccag
| ||| | |||||||||||  |  |||| || || |||||||||||| |||||||||| || ||||||||||| |||||  | ||||| ||   ||| ||||    ||| ||      || ||||||  | ||||   | ||||  | |   | |    || ||  ||| | |  |  ||  ||| |||||
CTGAGCATGATGTTGAGCAATTACTGGTATCACTTATTTTGGATAACAGAATTCAAGGACACATTGATCAAGTCAACCGGCTCTTAGAACGATCTGATAGgtgagtttttatgttgaattcttttttactggatttagtttgttcgtataaaacctcgtatctttattaacattctaaatacatt-tccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363999|gb|EC927636.1|EC927636
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAG                         ATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttc ... tattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
EST: gi|33405471|gb|CF211098.1|CF211098
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAG                         ATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttc ... tattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
EST: gi|33405408|gb|CF211035.1|CF211035
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAG                         ATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttc ... tattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
EST: gi|22015265|gb|BQ800299.1|BQ800299
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAG                         ATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttc ... tattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
EST: gi|33402297|gb|CF207924.1|CF207924
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAG                         ATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttc ... tattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
EST: gi|33402377|gb|CF208004.1|CF208004
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAG                         ATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGgttgagtttc ... tattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCT