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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAAgtatgctttcttgctctttgagatttcagaaggaaatggtgtaaaaaatttaactcaggagatcatactatttcatctaattaataagttgagtagtaatcaactagtgtatgcttgtgcttgaatcttgttcttttctacacag

Basic information

species Vitis vinifera
transcript Vv08s0040g00320.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os11g03780.2 (Oryza sativa), 5'ss of exon 10
GAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAAgtatgctttcttgctctttgagatt-----tcagaaggaaatggtgtaaaaaatt--taactcaggagatcatactatttca-----tctaattaataagttgagtagtaatcaactagtgtatgcttgtgcttgaatcttgttcttttctacacag
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GGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTTAAGgtacgttaaatgcccaagtaagaatagtcatccaaatataactgggtagagggttactacggttccatttttccttattgcagatgccatcattgcaaaacaaaatgttgttctat--gcatatgccattgtttcaagtttttttttcttattatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406071|gb|CF211698.1|CF211698
EST:     TCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAA                         GAAGTCCTTGATAGTATTGAGTTTGCGAGAGGTGCATCAAATTCTACATGG
genomic: TCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAAgtatgctttc ... ttctacacagGAAGTCCTTGATAGTATTGAGTTTGCGAGAGGTGCATCAAATTCTACATGG
EST: gi|161713110|gb|FC062474.1|FC062474
EST:     TCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAA                         GAAGTCCTTGATAGTATTGAGTTTGCGAGAGGTGCATCAAATTCTACATGG
genomic: TCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAAgtatgctttc ... ttctacacagGAAGTCCTTGATAGTATTGAGTTTGCGAGAGGTGCATCAAATTCTACATGG
EST: gi|161713404|gb|FC062796.1|FC062796
EST:     TCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAA                         GAAGTCCTTGATAGTATTGAGTTTGCGAGAGGTGCATCAAATTCTACATGG
genomic: TCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAAgtatgctttc ... ttctacacagGAAGTCCTTGATAGTATTGAGTTTGCGAGAGGTGCATCAAATTCTACATGG