Sequence
atgc intronic sequence ATGC exonic sequenceCGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTACGATGCTCTAAACAAGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattttcatatcatgtgaattcaatgactaactagaaagtttcctcctctctcttacaaaaatatggctgtgacttttggccatagatgatgtcatattggttagtttcttattggaagttctctatgtttttatggtgtaatatttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os10g33275.1 (Oryza sativa), 5'ss of exon 12
CGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTACGATGCTCTAAACAAGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattttcatatcatgtgaa-ttcaatgactaactagaaagtttcctcctctctcttacaaaaatatggctgtgacttttggccatagatgatgtcatattggttagtttcttattggaagttctctatgtttttatggtgtaatatttacag
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TGTAATTGATTGTGGCAAAGCAAAGGAAACAAGTTATGATGCCTTAAATAAGCTTGCATGCCTTCTACCATCATGGATATCAAAAGCTTCTGCCCATCAGgtacactgtcacagtttatggaaagttgaaaaatccaacaatagatgtacta---------aatggattttggttatgttacacag-----------------------------------------------------------------------
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 14
CGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTACGATGCTCTAAACAAGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattttcatatcatgtgaattcaatgactaactagaaagtttcctcctctctcttacaaaaatatggctgtgacttttggccatagatgatgtcatattggttagtttcttattggaagttctctatgtttttatggtgtaatatttacag
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TGTCATAGACTGGGGAAAAGCAAAGGAGACCAGCTATGATGCTCTAAATAAGCTTGCTTGCTTGTTGCCATCATGGATTTCAAAGGCTTCAGCTCATCAGgtattgaagttga----acatgatttt--tcacaa--cacgaggtttattgctcttgttgaacatgtgactcttcagagacttaactttctattatttccgaat--ccag----------------------------------------------
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 13
CGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTACGATGCTCTAAACAAGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattttcatatcatgtgaattcaatgactaactagaaagtttcctcctctctcttacaaaaatatggctgtgacttttggccatagatgatgtcatattggttagtttcttattggaagttctctatgtttttatggtgtaatatttacag
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TGTCATAGACTGTGGCAAAGCAAAGGAGACCAGCTATGATGCTCTAAATAAGCTTGCTTGCTTGTTGCCATCGTGGATTTCAAAGGCTTCAGCTCATCAGgtattgaagttgaa--catggtttttca-----caac-atgaggtttattgcttttatt---aaacatgtgact----cttcagaagctgagctttctgttactgccgaatccct-----------------------------------------
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 11
CGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTACGATGCTCTAAACAAGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattttcatatcatgtgaattcaatgactaactagaaagtttcctcctctctcttacaaaaatatggctgtgacttttggccatagatgatgtcatattggttagtttcttattggaagttctctatgtttttatggtgtaatatttacag
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TGTTGTGGATTGTGGTAAAGCAAAGGAAACTAGCTATGATGCTTTGAACAAGGTGGCATGTCTCTTGCCATCATGGATATCAAAGGCTTCAGCTCACCAGgtattcgactaaccataaaattg--tctatcagtaatcaaga--tccctttcattcaatgatctaagta---ctgcgccca--gatcatagatgtgcttgtaagacttaaaaccc-----gtgcttttctctgtggctttggtacaaa---tgcag
upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: EFJ10915 (Selaginella moellendorffii), 5'ss of exon 11
CGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTACGATGCTCTAAACAAGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattttcatatcatgtg---aattcaatgactaactagaaagtttcctcctctctcttacaaaaatatggctgtgacttttggccatagatgatgtcatattggttagtttcttattggaagttctctatgtttttatggtgtaatatttacag
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TGTTATCGACTGTGGGAAAGCTAAGGAAACTAGCTATGATGCTCTTAACAAGCTGGCGTGCCTTCTTCCATCCTGGATATCCAGGGCTGCTGCTCATCAGgtctgaatttacgtccttggttcttagctgaaggatttctagcacattttcttgcttttatttgccag-------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37185170|gb|CF604523.1|CF604523EST: AGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAG AGACGAGGACGAGCGGGCCGTGTGCAGCCTGGAGTTTGTTATAGACTTTAT
genomic: AGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattt ... atatttacagAGACGAGGACGAGCGGGCCGTGTGCAGCCTGGAGTTTGTTATAGACTTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTACGATGCTCTAAACAAGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattttcatatcatgtgaattcaatgactaactagaaagtttcctcctctctcttacaaaaatatggctgtgacttttggccatagatgatgtcatattggttagtttcttattggaagttctctatgtttttatggtgtaatatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA