1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAAGTTCTTGAGGTTGTAGCTGGCTGTAAAGGTGTCAGTGACATAGAACAACTAAGCAAGACTTTGTACAACAACACCTGCAGgtaattttgttggtatttttctttttaaagttcttttgaatttgtataccattcagttgtttgtctaagagaaatacttgatagaggtccaaaaatgctt...
species | Vitis vinifera |
transcript | Vv08s0032g01170.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTCAGTGACATAGAACAACTAAGCAAGACTTTGTACCACAACACCTGCAG AGTTTTCTTTCCTCAAGATTTGGACTCTGCGGCAGATGCTCTTCTTGCTGGEST: gi|87585201|gb|DY474017.1|DY474017
genomic: GTCAGTGACATAGAACAACTAAGCAAGACTTTGTACAACAACACCTGCAGgtaattttgt ... ttatgttcagAGTTTTCTTTCCTCAAGATTTGGACTCTGCGGCAGATGCTCTTCTTGCTGG
EST: GTCAGTGACATAGAACAACTAAGCAAGACTTTGTACCACAACACCTGCAG AGTTTTCTTTCCTCAAGATTTGGACTCTGCGGCAGATGCTCTTCTTGCTGG
genomic: GTCAGTGACATAGAACAACTAAGCAAGACTTTGTACAACAACACCTGCAGgtaattttgt ... ttatgttcagAGTTTTCTTTCCTCAAGATTTGGACTCTGCGGCAGATGCTCTTCTTGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTTCTTGAGGTTGTAGCTGGCTGTAAAGGTGTCAGTGACATAGAACAACTAAGCAAGACTTTGTACAACAACACCTGCAGgtaattttgttggtatttttctttttaaagttcttttgaatttgtataccattcagttgtttgtctaagagaaatacttgatagaggtccaaaaatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatg