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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACCAAAATATGGCTGCACGGCTGGCTAATACCATGTTCAACTCACTAAAGGGAAGGCCTGTTCAGgtatttttttaatctcacattaagtttaaaagatggattagactgtggctcatgataggtgcttcctacag

Basic information

species Vitis vinifera
transcript Vv08s0007g08690.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 11
GAAGACCAAAATATGGCTGCACGGCTGGCTAATACCATGTTCAACTCACTAAAGGGAAGGCCTGTTCAGgtatttttttaatctcacattaagtttaaaagatggattaga--ctgtggctcatgataggtgcttcctacag
|| |||||||  ||||||   ||  ||||||| || |||||||||||| ||||||| || |||||||||||||   |  ||| | | |||| |||    | || | || ||  || ||  | ||  |||  | ||| | |||
GAGGACCAAAGAATGGCTATTCGATTGGCTAACACAATGTTCAACTCATTAAAGGGTAGACCTGTTCAGgtatccgt--aatgttatattatgttggggatattgcttggaaactctgtataattgtagtagtttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30133877|gb|CB919216.1|CB919216
EST:     CACGGCTGGCTAATACCATGTTCAACTCACTAAAGGGAAGGCCTGTTCAG                         GGTCGTATATTTCAAGGAAAAGAGCCACCACAGTTTGTTGCCATCTTTCAG
genomic: CACGGCTGGCTAATACCATGTTCAACTCACTAAAGGGAAGGCCTGTTCAGgtattttttt ... cttcctacagGGTCGTATATTTCAAGGAAAAGAGCCACCACAGTTTGTTGCCATCTTTCAG
EST: gi|161710780|gb|FC059409.1|FC059409
EST:     CACGGCTGGCTAATACCATGTTCAACTCACTAAAGGGAAGGCCTGTTCAG                         GGTCGTATATTTCAAGGAAAAGAGCCACCACAGTTTGTTGCCATCTTTCAG
genomic: CACGGCTGGCTAATACCATGTTCAACTCACTAAAGGGAAGGCCTGTTCAGgtattttttt ... cttcctacagGGTCGTATATTTCAAGGAAAAGAGCCACCACAGTTTGTTGCCATCTTTCAG