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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAGTTGCTTGCGTCTGGTTATTGgtaagattctcattatcatcctcatctttttctttttcatattcatcctcatgtttatattgttatgcctattattgttattgttttcttctttttattc...

Basic information

species Vitis vinifera
transcript Vv08s0007g03930.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G21450.2 (Glycine max), 5'ss of exon 11
CTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAGTTGCTTGCGTCTGGTTATTGgtaagattc---tcattatcatcctcatctttttctttttcatattcatcctcatgtttatattgttatgcctattattgttattgttttcttctttttattc
| ||||| |||||||| ||||| || |||||||| ||||| | ||| |||||||||||||||| ||| ||||| |||||| | ||||| |||||||||||||||||||    | ||  | |   | |   ||||    || | |   |       |  || | | | |   ||   |||| ||||  ||      |||||   
CAAACAAGCAAAAGCATGTGTTCAAAAAGAATCCAAAGGCTCCTATCTGGGGTAAGCCTCCAAAAGTCATTGGTGGAAAGCTACTTGCTTCTGGTTATTGgtaagatttcatttatgttgaaattaaaggtttttaggtttagagggaaaggagagaatagagtatcac-tctggaattgatattcattatgatgttttac--

upper sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G07580.1 (Glycine max), 5'ss of exon 3
CTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAGTTGCTTGCGTCTGGTTATTGgtaagattctcattatcatcctcatcttt--ttctttttcatattcatcctcatgtttatattgttatgc-ctattattgttattgttttcttctttttattc
| ||||| ||||| || || || || |||||||| ||||| | |||||||||||||||||||| ||| ||||| |||||| | ||||| ||||||||||||||||||| |||||    |    ||  |   || ||    | |   |       |  || | | | |    ||   |||| | ||  ||      |||||   
CAAACAAGCAAAACCATGTATTCAAAAAGAATCCAAAGGCTCGTATTTGGGGTAAGCCTCCAAAAGTCATTGGCGGAAAGCTACTTGCTTCTGGTTATTGgtaagatt-tcatttatgttgaaattataggtttttaggtagagggaaaggagagaatagagtatcacattctgaaattgatcttcattatgatgttttac--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390091|gb|EC954979.1|EC954979
EST:     GGTAAGCCTCCAAGAGTTATTGGGGGAAAGTTGCTTGCGTCTGGTTATTG                         GGGAATCACAAGGCACTGTAATTACCTTGGGGACTTGTTGTTGGCACTGTC
genomic: GGTAAGCCTCCAAGAGTTATTGGGGGAAAGTTGCTTGCGTCTGGTTATTGgtaagattct ... cttgttgaagGGGAATCGCAAGGCACTGTAATTACCTTGGGGACTTGTTGTTGGCACTGTC
EST: gi|32458084|gb|CD799258.1|CD799258
EST:     GCCTCCAAGAGTTATTGGGGGAAAGTTGCTTGCGTCTGGTTATTG                         GGGAATCGCAAGGCACTGTAATTACCTTGGGGACTTGTTGTTGGCACTGTC
genomic: GCCTCCAAGAGTTATTGGGGGAAAGTTGCTTGCGTCTGGTTATTGgtaagattct ... cttgttgaagGGGAATCGCAAGGCACTGTAATTACCTTGGGGACTTGTTGTTGGCACTGTC