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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAGgtatcctcctttttgttctgtgacaattattctcatctatggcatttttttcatttattgtgtcatatggcatagaatggtaaaagattgttttaactcctactatggttgacag

Basic information

species Vitis vinifera
transcript Vv08s0007g03250.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30253288|gb|CB970839.1|CB970839
EST:     GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAG                         GCCCCTTGTTTAGAAGATCCAAACCCTGGAGTGAAAATGTTTGAAAGTGCA
genomic: GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAGgtatcctcct ... tggttgacagGCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
EST: gi|27755146|gb|CB035901.1|CB035901
EST:     GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAG                         GCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
genomic: GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAGgtatcctcct ... tggttgacagGCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
EST: gi|110370952|gb|EC934597.1|EC934597
EST:     GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAG                         GCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
genomic: GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAGgtatcctcct ... tggttgacagGCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
EST: gi|32246890|gb|CD712709.1|CD712709
EST:     GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAG                         GCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
genomic: GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAGgtatcctcct ... tggttgacagGCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
EST: gi|110413628|gb|EC979423.1|EC979423
EST:     GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAG                         GCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
genomic: GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAGgtatcctcct ... tggttgacagGCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
EST: gi|27578573|gb|CB001268.1|CB001268
EST:     GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAG                         GCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
genomic: GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAGgtatcctcct ... tggttgacagGCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
EST: gi|110423056|gb|EC989391.1|EC989391
EST:     GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAG                         GCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA
genomic: GTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACATTTTCAGgtatcctcct ... tggttgacagGCACCTTATTTAGAAGATCCAAACACTGGAGTGAAAATGTTTGAAAGTGCA