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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgccttccacttgcaattagaactcctgcagtttttaagtttcattgtagtgagtacaagattgtctctatatttctaagcacatgcccttga...

Basic information

species Vitis vinifera
transcript Vv07s0130g00310.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G098815_T01 (Zea mays), 5'ss of exon 11
GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgccttccacttgcaattagaactcctgcagttttta-agtttcattgtagtgagtacaagattgtctctatatttct---aagcacatgcccttga----
||||  |||||||| ||||||||||||||||| || ||||| ||  ||||||| || || ||||| || ||||| ||||||||||        ||||     ||||      |    |||  | |   |   || |||   ||  | | |    | || |   |   ||  |  |  |  | |    
GATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACGgtgagt--------cactcatgcttagcgaaggtctgctttgcataccattgctgaagtctatagcaaacttctgccatctcaatcggaaataattagctgtaaaaga

upper sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G00750.1 (Glycine max), 5'ss of exon 11
GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgccttccacttgcaatta--gaactcctgcagtttttaagtttcattgtagtgagtacaagattgtctctatatttctaagcacat-gcccttga
||||  |||||||||||||| |||||||||||||| ||||| ||  |||| ||||| ||||| || || |||||||| ||||||| | ||  |   | |  ||||  ||| |    || || ||   ||| |   | ||  ||      |       | |     |   | || |    | |
GATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAATATTATTAATGgtgagtttacc--cagttggacattattgaattgtaaca-ttattgtctttaaaaattgtaggtctctagtaaaggaaagaaaggaagataaattgtttgtta

upper sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G00610.1 (Glycine max), 5'ss of exon 11
GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgccttccacttgcaattagaactcctgcagtttttaagtttcattgtagtgagtacaagattgtctctatatttctaagcacatgcccttga-
||||  |||||||||||| | |||||||||||||| ||||| ||  |||| ||||| ||||| || || |||||||| ||||||| | ||         || |    | |  |    || ||   ||| |     ||  || |    |       | |     |   | ||    |||  
GATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATGgtgagtttacccagttgggacattattgaattgtaacattattgtctttaaaaaatgtaggtccctagtaaagaaaagaaaagaagataaat-tgtttgtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110427602|gb|EC994050.1|EC994050
EST:     ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG                         TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: gi|110358574|gb|EC922883.1|EC922883
EST:     ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG                         TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: gi|110423756|gb|EC990107.1|EC990107
EST:     GCCTAATTCGAAATAAAATTATTAACG                         TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
genomic: GCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: gi|26260610|gb|CA811673.1|CA811673
EST:     ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG                         TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: gi|26261165|gb|CA812228.1|CA812228
EST:     ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG                         TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: gi|110362733|gb|EC926283.1|EC926283
EST:     ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG                         TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA