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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGATATGAGGAAGCTACTCCAATGGTGTTTTGTGGCTTGTTTCCTGTTGATGCAGACAAgtactgattcatacttacttttattgtcctttaaatttttattttccttctgtggtgccattcatttatgttaattttgttgttag

Basic information

species Vitis vinifera
transcript Vv07s0031g03050.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 5'ss of exon 11
CCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGATATGAGGAAGCTACTCCAATGGTGTTTTGTGGCTTGTTTCCTGTTGATGCAGACAAgtactgattcatacttacttttattgtcctttaaatttttattttccttctgtggtgccattcatttatgttaattttgttgttag
| |||||||| | |   |  |  || |||    |  | || ||||||    ||||||| |||||||| |||||||||||||||||| | ||||| ||  ||||||     |||||| |  ||    |  |||  ||| || |||||      |||   ||   ||| |   |  || |  ||||||
CAATTACTCATTCTTCAAAAAGAGCAGAATGTGCTTTACCAGGATATTCCCAAGCTACCCCAATGGTTTTTTGTGGCTTGTTTCCTATAGATGCGGATCAgtact-----atactttcccttgaaattttttccattatt-ttttctgcacatgg-atcacatattaaatatggttgt-ctgttag

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 11
CCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGATATGAGGAAGCTACTCCAATGGTGTTTTGTGGCTTGTTTCCTGTTGATGCAGACAAgtactgat-tcatacttacttttattgtccttt-----------aaatttttattttccttctg--------tggtgccattcattta--tgttaat-tttgttgttag
|  ||||||||||||| || ||||| || || || || ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| | || || |  | ||  |  |  | ||||            |||| | || || ||  ||        |||  | | |||| |   | |||   |||||||| ||
CTGTTACTCACTATGGCAGAAAGGCTGACAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAgtatttatctcttgttgaccctcttctttctttcttgagcaaaagaattgtaatgttactcttgaatgtatctggaactaatcatatccttattatcatttgttgtcag

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 11
CCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGATATGAGGAAGCTACTCCAATGGTGTTTTGTGGCTTGTTTCCTGTTGATGCAGACAAgtactgat-tcatacttacttttattgtccttt----------aaatttttattttccttctgtggtgccattca--tttatgttaattttgttgttag----------
| |||||||||||||| || ||||| || || || || ||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||| |||| | || || |  | ||  |  |  | ||||          | | || |||| |   |||    ||    | |   | ||  ||   ||  | | |           
CTATTACTCACTATGGCAGAAAGGCTGACAATTCTCTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGGTTGTTTCCTGTTGATGCTGACCAgtatttatctcttgttgaccctcttctttctttcttgagcaaaagagttgtattgttactcttgaatgtatctgaaactaatcatatccttactatcatttgttgtcag

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G33480.1 (Glycine max), 5'ss of exon 5
CCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGATATGAGGAAGCTACTCCAATGGTGTTTTGTGGCTTGTTTCCTGTTGATGCAGACAAgtactgat-tcatacttacttttattgtccttt-----------aaatttttattttccttctg--------tggtgccattcattta--tgttaat-tttgttgttag
|  ||||||||||||| || ||||| || || || || ||||||||||||||||| ||||| |||||||  |||||||| |||||||||||||| ||| |||| | || || |  | ||  |  |  | ||||            |||| | || || ||  ||        |||  | | |||| |   | |||   |||||||||||
CTGTTACTCACTATGGCAGAAAGGCTGACAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTCCTGTGGCTTATTTCCTGTTGATGCTGACCAgtatttatctcttgttgaccctcttctttctttcttgagcaaaagaattgtaatgttactgttgaatgtatctggaactaatcatatccttattatcatttgttgttag