Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcagaattctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02240.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G21510.1 (Glycine max), 5'ss of exon 11
AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcagaattctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag
||| |||||||||||||| ||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||| |||||| | |   |    |||    | |||   | |  |    |||| ||   || |   |   |||           |  | |   ||||||  |  ||     ||  |                                                                                
AGTTGTCCAAGGGATTCCTCTTGTTCAAGGCTCAGACAGATATTTTTGGTTTGGTCGGCCTCAGTTAGTTCTTCACCTTATCCATTTTGCTTTGTTCCAGgtattcaattg-gtttcc---tttaaacagaatcatgaacaaatgtttagaagatggaatggaacagacaacacacg-tataactgttca--ggtttagagttgaaa--------------------------------------------------------------------------------

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G32920.1 (Glycine max), 5'ss of exon 7
AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcaga-attctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag
 || |||||||||||||| ||||| ||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||| |||||| |||||| |   ||     |      |||   |||  | ||   |||| ||    | |   | |||| |     ||  |  |  || || ||| |  || |||    ||                                                                                   
TGTTGTCCAAGGGATTCCTCTTGTTCAAGGCTCAGACAGATATTTTTGGTTTGGTCGGCCTCAATTAGTTCTTCATCTTATCCATTTTGCTTTGTTCCAGgtatt---caatttgtttcctttaagccgaatca-ttaacaaatgtttagcagatggaacagacaacacatgtatatacagttctggttta--gaattgaaaatgc----------------------------------------------------------------------------------

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G36170.1 (Glycine max), 5'ss of exon 10
AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcaga-attctttgagttcaatgtcctt--gttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag
||| |||||||| || || ||||| ||||||||||||||||| ||||||||| ||  ||| ||||||||||| |||||||||||||||| |||||| ||||||   |  || |  ||| |  || ||   ||| |    ||||| || |  | ||  |  ||| | | | | | | |   |   |   ||||| ||      ||                                                                                      
AGTTGTCCAAGGAATGCCTCTTGTCCAAGGCTCAGACAAATACTTTTGGTTTGGTCAGCCACAGTTAGTTCTACATCTTATCCATTTTGCTTTGTTCCAGgtatgcaatag-atttcctt-ttagaagatactggg--ataaatgtttttgatacggaatagacaatatataactactgagatttgaagttcaatgcagccttt--------------------------------------------------------------------------------------

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G09270.1 (Glycine max), 5'ss of exon 11
AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccat--actaaaatgaactagttcgtaaattttgtaaaaacttagcaga--attctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag
||| |||||||| || || ||||| || |||||||||||||| ||||||||| ||   || ||||||||||||||| |||| ||||||| |||||| |||||| | ||  |    ||  |     ||||  |   |  |   |||| || |  | ||  |  |||  |||  ||   |   |  ||   | |   |   |                                                                                           
AGTTGTCCAAGGAATGCCTCTTGTCCAGGGCTCAGACAAATACTTTTGGTTTGGTCAACCACAGTTAGTTCTTCATGTTATTCATTTTGCTTTGTTCCAGgtattcagtgggttttcttttagtaaaaactagtcaaattacaaatgtttttgatacggaatagacaatttattagttattacatctgagatttgtagtt-------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688552|gb|EC920354.1|EC920354
EST:     TTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAG                         AATGCGTTCCAGATAACATATTTCCTGTGGATATGG
genomic: TTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagca ... gtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG
EST: gi|122689026|gb|EC930382.1|EC930382
EST:     TTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAG                         AATGCGTTCCAGATAACATATTTCCTGTGGATATGG
genomic: TTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagca ... gtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG