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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGATTTTTGTTGGAAGGCTTCCTCAGGAAGCAAGCGCCGAAGATCTTCGTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattagagataaacttattattctaccaccaatagatggattcaaggtaacttcaaaacagaggaatattcattttatgtag

Basic information

species Vitis vinifera
transcript Vv07s0031g00600.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 11
AAAGATTTTTGTTGGAAGGCTTCCTCAGGAAGCAAGCGCCGAAGATCTTCGTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattagagataaacttattattctaccaccaatagatggattcaaggtaacttcaaaacagaggaatattcattttatgtag
 || |||||||||||  | ||||| |  |||||||   | || ||||||||||| |||||||| |||||||| ||||| || |||||||||||||| | |||||  ||   | |||   ||   | ||| |    |   || |  |    ||||||           | | ||  ||||  ||||
GAAAATTTTTGTTGGCCGTCTTCCCCCAGAAGCAACTTCTGATGATCTTCGTCAATATTTTGGAAGATTTGGTCGTATATTAGATGTTTATGTTCCAAGGgtaagatattaaaaaaaa-atgcatatactagtgttg--tgaaagctgaataactt-----------agttttttttttgggtag

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 11
AAAGATTTTTGTTGGAAGGCTTCCTCAGGAAGCAAGCGCCGAAGATCTTCGTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattagagataaacttattattctaccaccaatagatggattcaaggtaacttcaaaacagaggaatattcattttatgtag
||| |||||||| ||  | ||||| |  |||||||   | || |||||||| || |||||||| |||||||| ||||| || |||||||||||||| | |||||  || | | |||              |   ||| |||  |    || ||  | || | |   || | |   ||||  ||||
AAAAATTTTTGTCGGCCGTCTTCCCCCAGAAGCAACTTCTGATGATCTTCGCCAATATTTTGGAAGATTTGGTCGTATATTAGATGTTTATGTTCCAAGGgtaagatatacaaaaa--------------atgcatatatgagtgttgggaaagctgaata-acttgattttgttttttgggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415764|gb|EC981696.1|EC981696
EST:     GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG                         GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: gi|349818091|gb|FQ408866.1|FQ408866
EST:     GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG                         GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: gi|110429617|gb|EC996114.1|EC996114
EST:     GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG                         GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: gi|30129481|gb|CB914820.1|CB914820
EST:     GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG                         GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: gi|351020076|gb|FQ445683.1|FQ445683
EST:     GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG                         GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: gi|349811719|gb|FQ409716.1|FQ409716
EST:     GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG                         GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: gi|349818104|gb|FQ408879.1|FQ408879
EST:     GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG                         GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA