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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATCTCTGGGGAAAGACTCTCCAAgtgagtgcttcaaatgtggtttctttaatgatttcttatgtattctgtccatgagcatgacatagaaagtacaactgacatgtgttttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00470.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 5'ss of exon 12
TGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATCTCTGGGGAAAGACTCTCCAAgtgagtgcttcaaatgtggtttctttaatgatttcttatgtattctgtccatgagcatgacatagaaagtacaactgacatgtgttttcag
||||||  |  |  |||| || |||||||||||||||||||| || ||||| || |   |||| |||||||| ||||| || |||||||| |||||||| ||      |   | | | |||   |||    | |   ||| |   ||||  |||   |  ||||  || | |   |               
TGCATGTCTTGCTTTGGAGCTCATGTTTCATTTGAGTGTTCTCCCGCTTACACGCCAATTGACAAATATCAGCGGTAACCTGTGGGGAAAAACTCTCCAGgtagaccatc--attatcgttagcttacgtgtataaaatggaagttgtct-tgacactctcata--aattgcttgtag-------------

upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 13
TGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATCTCTGGGGAAAGACTCTCCAAgtgagtgct--tcaaatgtggtttctttaatgatttcttatgtattctgtcc--atgagcatgacatagaaagtacaact----gacatgtgttttcag
||||||| | || |||||||| |||||| |||| ||||||||||| || || ||||  ||||||||||| ||||| ||||| ||||| || ||||| || |||||  |   ||| || |  || ||    ||||||  |||    | || ||  |    ||       | || ||    |        | |  ||||||
TGCATGGCTGTCTATGGAACTCATGTTTTATTTAAGTGTTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTTCAGgtgagctcctgtcacatttacttgctagcttgatttgatattagatatgacctaacagccagaggcctgcaactaatgttttttagtttattatttcag

upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G67100.1 (Arabidopsis thaliana), 5'ss of exon 12
TGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATCTCTGGGGAAAGACTCTCCAAgtgagtgcttcaaatgtggtttctttaatgatttcttatgtatt-ctgtccatgagcatgacatagaaagtacaactgacatgtgttttcag
|||||||||||||||||| || ||||||||| | |||||||||||||| ||||  |  || ||||| || ||||| ||||| ||||| || || || ||||| |   ||     | |   | |  |   |      ||||| || |||| |     |||| |||     || ||  ||||  |         
TGCATGGTTATCCATGGAGCTCATGTTTCATCTAAGTGTTCTTCCTCTCACTCTCCAGCTTACTAACATAAGTGGCAATCTTTGGGGGAAAACACTTCAAgtaatgactctccctctccctcccatc-cgggaaaatatgtgttactgtgctgactcatg-cattttttgttca--tgaccag---------