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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGAAGCTCGACCTGAGTTGGACCATAATCATTCAAAAGCAGTGAAGATCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccatgtgaaattgaaaaattttcgacataaattttcagtatctttcaggataacataaagttattgacttcttggtctttttaatgcgataataagaaaattttgagatggcatcataagcatgaggtttccatccttttctctgtag

Basic information

species Vitis vinifera
transcript Vv07s0005g05030.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA19G35460.1 (Glycine max), 5'ss of exon 14
TAATGAAGCTCGACCTGAGTTGGACCATAATCATT------CAAAAGCAGTGAAGATCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccatgtga--aat-tgaaaaattttcgacataaattttcagtatctttcaggataacataaagttattgacttcttggtctttttaatgcgataataagaaaattttgagatggcatcataagcatgaggtttccatccttttctctgtag
         ||   |||| ||||| | |||||||       |  |||  || ||||| ||||||   ||||| |||||||||||||| ||||||||||||||| |||||  |  |||  |  | | |   | |   | |   |  | ||| | ||| |    ||| |||| |||| | | |      | |       |||    | | || |||||                                               
------GCATCCTTCTGAATTGGAACGTAATCATCACTCAGCTGAAGATGTAAAGATTAACTCTATGACAGACACAGGACCCAGCATTCCTCAAATTCTTCATATGgta-agttatgcaactagtataggataagctggttttgtaattttattattt----ggaaaacaaaaagatctgg------tagaaagagaaatatagtgagaaaaaaata----------------------------------------------

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 14
TAATGAAGCTCGACCTGAGTTGGACCATAATCATTCAAAAGCAGTGAAGATCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgta---tggccatgtgaaattgaaaaattttcgacataaattttcagtatctttcaggataacataaagttattgacttcttggtctttttaatgcgataataagaaaattttgagatggcatcataagcatgaggtttccatccttttctctgtag
  ||    ||  |   ||  |  | ||| |     |  |||  || || || ||| |    ||| | |||||||||||||| ||||||||||||||| ||||    |   ||  |   || | | || ||      | ||||||    ||  ||| | | | || ||  |  |  |      |   | ||    |  | ||||                                                      
GCATCCTTCTGAATTGGAACTTAATCATCACTCAGCTGAAGATGTAAAAATTAACACCATGACACACACAGGACCCAGCATTCCTCAAATTCTTCATATGgtgagttatgcaactagtataggataagttggttttttaatttt----attattcggaaaaccaaaagatcctgtagaaagagaaatattgtgagaaaaaatag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407571|gb|CF213198.1|CF213198
EST:     TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG                         GTTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
EST: gi|349827765|gb|FQ422633.1|FQ422633
EST:     TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG                         ATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
EST: gi|351056897|gb|FQ443524.1|FQ443524
EST:     TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG                         ATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
EST: gi|351024484|gb|FQ426293.1|FQ426293
EST:     TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG                         ATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
EST: gi|351046710|gb|FQ453326.1|FQ453326
EST:     TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG                         ATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT