Sequence
atgc intronic sequence ATGC exonic sequenceTGAACACATATTACTTGCCTACGGTCGGCGTCATAGTTCTCTCCTTAAAAGCCTTGTTATCGATGGGGAAACGACATTACCTATTTACACAATTTTGGAGgtaacacttcaaaattttaatagcattaggcagtaaatatggtactgaagatctccaattgaagtgctggtcaagtactttattatctgttcaaatcttactgttctgatctttcaggtctcacaggctctttttgtcactcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G32620.4 (Glycine max), 5'ss of exon 11
TGAACACATATTACTTGCCTACGGTCGGCGTCATAGTTCTCTCCTTAAAAGCCTTGTTATCGATGGGGAAACGACATTACCTATTTACACAATTTTGGAGgtaacacttcaaaattttaatagcattaggcagtaaatatggtactgaagatctccaattgaagtgctggtcaagtactttattatctgttcaaatcttactgttctgatctttcaggtctcacaggctctttttgtcactcag
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TGAGCACATACTACTTGCGTATGGTCGGCGTCATGGTTCTCTTCTTAAAAGTATTGTTATCGATGGAGAAACAACATTGCCTATATATACAGTGTTAGAGgtaaaatgaatgctctctctctctctcaatcttaaaattttctgatgtgaattgct--ctcacat-ctaacca--ctctttgtattctgtataatctttagtatg---------------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA19G35370.3 (Glycine max), 5'ss of exon 11
TGAACACATATTACTTGCCTACGGTCGGCGTCATAGTTCTCTCCTTAAAAGCCTTGTTATCGATGGGGAAACGACATTACCTATTTACACAATTTTGGAGgtaacacttcaaaattttaatagcattaggcagtaaatatggtactgaagatctccaattgaagtgctggtcaagtactttattatctgttcaaatcttactgttctgatctttcaggtctcacaggctctttttgtcactcag
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TGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTGTTAGAGgtaaaatgctctctctaaaaaaaaattctgatgtgaatt----------gctcttatatctaaccaccctttgtattctgtataatcttttagtatgaggtaagtatgat----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110365229|gb|EC927880.1|EC927880EST: GCCTTGTTATCGATGGGGAAACGACATTACCTATTTACACAATTTTGGAG GTTTACCGAGTCTCAGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAA
genomic: GCCTTGTTATCGATGGGGAAACGACATTACCTATTTACACAATTTTGGAGgtaacacttc ... tgtcactcagGTTTACCGAGTCTCAGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAACACATATTACTTGCCTACGGTCGGCGTCATAGTTCTCTCCTTAAAAGCCTTGTTATCGATGGGGAAACGACATTACCTATTTACACAATTTTGGAGgtaacacttcaaaattttaatagcattaggcagtaaatatggtactgaagatctccaattgaagtgctggtcaagtactttattatctgttcaaatcttactgttctgatctttcaggtctcacaggctctttttgtcactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG