Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTACTAAACAAAGTTCCATTTCCATTACCTACTCCTGGTCTATTCAATCTGGATCTGATCAATGCTTTTACTTCAGATACGGTCGTTTCAGAAAATGgttggtatagtagttttaagcgagatcttaccatctttcttttaatgtcagatatgaataaacttttccggttatggttgtctcattctttcattgcctccattatttttggtggtattgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g04440.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G18950.2 (Glycine max), 5'ss of exon 11
ATATTACTAAACAAAGTTCCATTTCCATTACCTACTCCTGGTCTATTCAATCTGGATCTGATCAATGCTTTTACTTCAGATACGGTCGTTTCAGAAAATGgttggtatagtagttttaagcgagatcttaccatctttcttttaatgtcagatatgaataaacttttccggttatggttgtctcattctttcattgcctccattatttttggtggtattgcag
|||||||||||||| || || |||||| |||||  |||||   |||| |||||||||  |||| | ||||| ||| ||||||| || |||||||||||||||  || |  |  |||       |||| ||   || || ||||  |   ||| || |   |||| |  |  |||||  |  | |||| |||  |||     || |  ||||  |         
ATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGgtaagtttctttattt-------gatcataaggtcattttttttct-cgagacattatagaactgtgtctcttatg--tcccacattttttgtttg-----atgaaatttgcag---------