1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAACGAGATGCTTGTATTAAGACTGTGAGAACATGGGACGAATTCATAGAAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATGgtatggaaactcatccctcatgtgctattgtgggttgtcttagttgatacatatcatttgataattacttgtttcttattcaacattatgactctgcctc...
species | Vitis vinifera |
transcript | Vv07s0005g02620.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATG GAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCTEST: gi|30306346|gb|CB983140.1|CB983140
genomic: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATGgtatggaaac ... gactcgctagGAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCT
EST: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATG GAAGTGGAAAAAGATGTGGAAGCAAGGACAAAGGGCGAGACAGGAGCAGCTEST: gi|110427116|gb|EC993547.1|EC993547
genomic: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATGgtatggaaac ... gactcgctagGAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCT
EST: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATG GAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCTEST: gi|349826601|gb|FQ418692.1|FQ418692
genomic: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATGgtatggaaac ... gactcgctagGAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCT
EST: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATG GAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCTEST: gi|110361565|gb|EC925047.1|EC925047
genomic: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATGgtatggaaac ... gactcgctagGAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCT
EST: AAGCGCTTGGTCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATG GAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCT
genomic: AAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATGgtatggaaac ... gactcgctagGAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACGAGATGCTTGTATTAAGACTGTGAGAACATGGGACGAATTCATAGAAGCGCTTGGCCAGAAGAAAATGATCCTTGCTCCTTGGTGTGATGAGATGgtatggaaactcatccctcatgtgctattgtgggttgtcttagttgatacatatcatttgataattacttgtttcttattcaacattatgactctgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG