Sequence
atgc intronic sequence ATGC exonic sequenceGCTAACAAAATTTTGATGGAGAAGATAGAGGATGATCAGTTTTTAGACCTTATGACAGTGAAAACTGATGTTCGTGCTGTATGTAAGGAGCCTTACAGgtcaagtcatagacctccttttgatttgtttattaacttattcagcctgcttagtgatttccaatctcataatatttgttatgtttggtattattttaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G37450.1 (Glycine max), 5'ss of exon 13
GCTAACAAAATTTTGATGGAGAAGATAGAGGATGATCAGTTTTTAGACCTTATGACAGTGAAAACTGATGTTCGTGCTGTATGTAAGGAGCCTTACAGgtcaagtcatagacctccttttga---tttgtttattaacttattcagcctgcttagtgatttccaatctcataatatttgttatgtttggtattattttaac
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GCAAACAAAATGTTGATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACTGTTAAAACAGAAGTTCGTGCTGTATGTAAAGAGCCTTACAGgttaagccccaaatctcaatgtcaatttttgtttatccaactgttcatgttggttgatg-tgtttgacatcatg-tacattttacacgtcatagtttttcta-
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA19G40050.1 (Glycine max), 5'ss of exon 11
GCTAACAAAATTTTGATGGAGAAGATAGAGGATGATCAGTTTTTAGACCTTATGACAGTGAAAACTGATGTTCGTGCTGTATGTAAGGAGCCTTACAGgtcaagtcatagacctc----------cttttgatttgtttattaacttattcagcctgcttagtgatttccaatctcataatatttgttatgtttggtattattttaac
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GCAAACAAAATGTTGATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACGGTTAAAACGAAAGTTCGTGCTGTATGTAAAGAGCCTTACAGgttaagccccaaatctcaatgtcaatgctaccattttgtttatccaactgttcatgttggttgatg-tgtttgacatcatg-tacattttacatgtcatagt--------
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT4G02260.3 (Arabidopsis thaliana), 5'ss of exon 11
GCTAACAAAATTTTGATGGAGAAGATAGAGGATGATCAGTTTTTAGACCTTATGACAGTGAAAACTGATGTTCGTGCTGTATGTAAGGAGCCTTACAGgtcaagtcatagacctccttttgattt-gtttattaacttattcagcctgcttagtgatttccaatctcataatatttgttatgtttggtattattttaac
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GCAAACAGAATTTTGGTGAAAAAGATTGAAGATGATCAGTTTCTGGACCTTGTGACTGTGAATACTGATGTTCGATCTGTTTGCAAGGAAACTTACAGgtgaattcataagtgacttcttcattttaccttgtaacctaccc--ttttcttcagcatctgaagtctctt-----tttttatctgcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352772776|gb|FQ473814.1|FQ473814EST: CTTATGACAGTGAAAACTGATGTTCGTGCTGTATGTAAGGAGCCTTACAG TATTTACAAAGCTGTGCACAAATCTAGAGGTTCAATAAATGAGGTTAATCA
genomic: CTTATGACAGTGAAAACTGATGTTCGTGCTGTATGTAAGGAGCCTTACAGgtcaagtcat ... tttgttacagTATTTACAAAGCTGTGCACAAATCTAGAGGTTCAATAAATGAGGTTAATCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAACAAAATTTTGATGGAGAAGATAGAGGATGATCAGTTTTTAGACCTTATGACAGTGAAAACTGATGTTCGTGCTGTATGTAAGGAGCCTTACAGgtcaagtcatagacctccttttgatttgtttattaacttattcagcctgcttagtgatttccaatctcataatatttgttatgtttggtattattttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG