Sequence
atgc intronic sequence ATGC exonic sequenceTATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAGgtacacaaatattggaagaaaatagtaacttggtttaaaattctcgatcaaatcttctatattcaattttttaatgttgcaccaagaaagtgcagtagaaatttttcatctggtgcaaaacaaaacaagggatcataccactaacatatgtctgtttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os03g02150.2 (Oryza sativa), 5'ss of exon 11
TATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAGgtacacaaatattggaagaaaatagtaacttggtttaaaattctcgatcaaatcttctatattcaattttttaatgttgcaccaagaaagtgcagtagaaatttttcatctggtgcaaaacaaaacaag-ggatcataccactaacatatgtct-gtttttcag
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TATTAGAAGGCGGGCTCTTGATCTGTTATATGGTATGTGTGATGTTACGAATGCAAAGGAAATTGTCGAGGAGTTATTGCAGgtatataa-tattgaaatag--tggtctctcaaatgaaaaat--------aaacttcgaaa-----------aatattgaggcatgttattt--gtcga----tgtcatctgttg---gtcttgttatgtgaatcctaagactagttattatcttgtttctcag
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 11
---TATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAGgtacacaaatattggaagaaaatagtaacttggtttaaaattctcgatcaaatcttctatattcaattttttaatgttgcacca------agaaagtgcagtagaaatttttcatctggtgcaaaacaaa-acaagggatcataccactaacatat-gtctgtttttcag
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CAGTATTCGGAGGCGTGCTCTAGATTTGCTTTATGGCATGTGTGATGTTTCAAATGCAAAGGATATAGTTGAAGAACTACTGCAGgtatagagctag-gtccgaactaattcatgcaatttgaaaatctcattaaagtaaaccctacccccttcccaacagcaacctcatggaacaataaacaaaataaagaaaatgaaccagctattacctggatacacaaaatgattagtttgcaattccaacttttttgtag
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 11
TATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAGgtacacaaatattggaagaaaatagta-acttggtttaaaattctcgatcaaatcttctatattcaattttttaatgt-------tgcaccaagaaagtgcagta--gaaatttttcatctggtgcaaaacaaaacaagggatcataccactaacatatgtctgtttttcag
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TATTCGGAGGCGTGCTCTAGATTTGCTTTATGGCATGTGTGACGTTTCAAATGCAAAGGATATAGTTGAAGAACTACTGCAGgtatggagcta--ggtccaaactaattcatgaaatttgaaaatctcattaaagtaaaccgtatctccttcccaacagaaacctcatggaacaataaacaaaagaaagaaaatgaaccagctattacctggatacacaatg-attagtttgctattccaactgt-ttttgtag
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 11
TATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAGgtacac-----aaatattggaagaaaatagtaacttggtttaaaattctcgatcaaatcttctatattcaattttttaatgttgcaccaagaaagtgcagtagaaatttttcatctggtgcaaaacaaaacaagggatcataccactaacatatgtctgtttttcag
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TATTCGTAGACGCGCTCTTGATTTGCTATATGGGATGTGCGATGTGTCAAATGCAAAGGATATAGTTGAAGAGTTGTTGCAGgtaagtctttgaccttccctcatgatttgtgaagtttaacagaaaggaaggattaagttggtagtgtttaagctt---acatggaacccaaaaa-tacattgcag--------------------------------------------------------------
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G22770.2 (Arabidopsis thaliana), 5'ss of exon 12
TATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAGgtacacaaatattggaagaaaatagtaacttggtttaaaattctcgatcaaatcttctatattcaattttttaatgttgcaccaagaaagtgcagtagaaatttttcatctggtgcaaaacaaaacaagggatcataccactaacatatgtctgtttttcag
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TATTCGTAGGCGTGCTCTTGATTTATTATATGGGATGTGTGATGTGTCAAATGCAAAGGATATAGTCGAAGAGTTGCTGCAGgta----agtctttga------ccttactttatattaatatttcttgatttttagtctccttatgatttgtgaa-gtttaac--agaaag----gaaggattaagttgtgtagtgtttaagcttacatggaa----gctaaaaatatattgcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857368|gb|DT006423.1|DT006423EST: GTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAG TATCTCAGCAGTGCTGACTTTGCTATGCGCGAGGAATTGTCACTAAAAGCA
genomic: GTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAGgtacacaaat ... tgtttttcagTATCTCAGCAGTGCTGACTTTGCTATGCGCGAGGAATTGTCACTAAAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAATGCAAAGGACATTGTTGAAGAATTACTGCAGgtacacaaatattggaagaaaatagtaacttggtttaaaattctcgatcaaatcttctatattcaattttttaatgttgcaccaagaaagtgcagtagaaatttttcatctggtgcaaaacaaaacaagggatcataccactaacatatgtctgtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG