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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttattgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag

Basic information

species Vitis vinifera
transcript Vv06s0009g03750.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G010342_T01 (Zea mays), 5'ss of exon 10
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttattgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag
 |||||||||||||||||||||||  | ||||||||||||||||| || |||||| | || || ||||| |||||||| ||  | || ||||  || |     | ||| |   |  | || | ||   | |  ||  |   ||  | | ||  ||||| | |     |||||  |   |                                                                   
GTGGAGAAATGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGGAAAACTATCCAATCTGTTTCCATGCTTGGCTTCCTTCATgtaattatttc----tcattgt--attttcttgtcatcattatgatgaatgaaattgtcttttaatattgatatctgatttatttgtcgcag------------------------------------------------------------------

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G141258_T01 (Zea mays), 5'ss of exon 11
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttattgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag
 |||||||| ||||||||||||||  | ||||||||||||||||| || |||||| | || || || || |||||||| ||  | || ||||  || |   | || |  ||  |  | | || ||| |  |       ||| || ||||   ||| | |   || ||    | || |                                                                     
GTGGAGAAACGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGAAAAACTATCCAATCTGTATCCATGCTTGGCTTCCTTCATgtaattatttctca-ttgtatttgct--tgtcatcattacgatgaataaaattgtcttttaacattaatatc--tgacacatctgttgtag-------------------------------------------------------------------

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 11
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttat-tgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag
||||||||||||||| ||||| ||||| || ||||||||||| ||||| |||||||| |||||||| || |||||||| ||| ||||||||      |||||   |||  || | | ||||   ||||  |||   |  | || ||  ||  ||| |||||  |  ||                                                                               
CTGGAGAAATGATACAAATGTCATTTTAGCCGATGAAATGGGCCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTGCAGgta------tagtatcaattcctatttg-attacacttgcccttgcaat-gtaataatgcatgcgtttttgttccttgcacag----------------------------------------------------------------------------

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 11
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttat-tgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag
 |||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||| ||| | ||||||      |||||  |  |||| |    ||||   ||||  |||   |  | || ||  ||  | | |||||  |  ||                                                                               
TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgta------tagtatct-ctatttg----attacacttgcccttgcaat-gtaataatacatgcgcttttgttccttgcacag----------------------------------------------------------------------------

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 12
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttattgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag
||||   |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |  ||||  |  || | |   |     | |   |||||  ||  ||    ||| | |  | || || ||    | | | ||  |    | |    | | ||||| || ||| ||      || |  | ||                         
CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtgaaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaatcttgttctctt-ttcttagcattacttttcatgagctaacatatctcttcttttatttcttttcttttttct--tgcag------------------------

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: PP1S93_123V6.1 (Physcomitrella patens), 5'ss of exon 12
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttattgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag
 ||||| || || || ||||||||  | || |||||||||||||||||||| || || |||||||| || |||||||| |||||||||||  | | ||     ||| |  |  || | |  || || | ||| |||| ||  | || | ||   |    |    | ||||||||||||||||||| | ||||                                                      
TTGGAGGAACGACACCAATGTTATCCTTGCAGATGAAATGGGTCTTGGCAAGACAGTTCAGTCAGTCTCGATGCTTGGATTTTTGCAGgtgtggacctgac--ttagtgctc-tactttctttttttcctttttgttcat-gtgatgttttaaaaaaactaagtttattattattattattattattatttt------------------------------------------------------

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 12
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttattgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag
 |||||||| || || ||||||||| | || |||||||||||||||||||| || || |||||||| || |||||||| ||| | |||||  | | ||  ||  || |  |     | |   | |  || |     |   | ||  | |     |          ||  |  | | |   |||  |    |                                                       
TTGGAGAAACGACACCAATGTTATTCTTGCGGATGAAATGGGTCTTGGCAAGACGGTTCAGTCAGTGTCGATGCTTGGATTTCTTCAGgtgtggacct--tacctactgctctctctctctctctctctctctctctctctctctctcacacacacacacacacacac-acaaatgtatatatagcacact-------------------------------------------------------