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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttcaaagtgatcatttatgtagaggttccctaaactgaaaaatgtataagatagtgtgttttacaatttaatctcagtttacctatcaaaccatatggaaaagtgagtttaacttttacattattttttcag

Basic information

species Vitis vinifera
transcript Vv06s0009g02790.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G44690.1 (Glycine max), 5'ss of exon 11
GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttcaaagtgatcatttatgtagaggttccctaaa--ctgaaaaatgtataagatagtgtgttttacaatttaatctcagtttacctatcaaaccatatggaaaagtgagtttaacttttacattattttttcag
|| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||  |||||   | ||||    || | |   ||  | |   || |  | | || | || |   |||||   ||      |  |    |    |  |||  |||     | ||  |||   || ||||  ||  ||||||
GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATGgtatattttcagt-taatcaaa-gtgaaaattatctttcagttcttatgactataaaggaaaac-tgtttggtaaagatgccaaaaaccaaaagtataactgtataactga-tgctttttgtttctaca--atcatttcag

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 11
GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttcaaagtgatcatttatgtagaggttccctaaactgaaaaatgtataagatagtgtgttttacaatttaatctcagtttacctatcaaaccatatggaaaagtgagtttaacttttacattattttttcag
|| ||||||||||| || |||||||| |||||| |||||||||||||||||||||||   ||||    | | ||  | ||  |  ||  ||   ||      | |  ||   |    | |||           |  ||  |  |  ||||   |||     | ||  ||| | || ||||  ||  ||||||
GAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATGgtatatattca----gttaatcaaagtgcaaattagctt--ctagttcttatggaaataaaaaagcttt-----------ttggtaaagatgccaaaa-gtattactga-tgttttttatttctaca--atcatttcag

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G06100.1 (Glycine max), 5'ss of exon 11
GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttc--------aaagtgatcatttatgtagaggttccctaa-actgaaaaatgtataagatagtgtgtt-ttacaatttaatctcagtttacctatcaaaccatatgg-aaaagtgagtttaacttttacattattttttcag------------
|| ||||||||||| || |||||||| ||||||||| | ||||||||||||||||||  ||||        ||||| |  |||    |  || |    ||  | | |  |   |  |   || |   || ||   |||| |  |   |  | || |      | |||  ||||||     | | |||||  |  || ||||              
GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttctgttaatcaaagtaaa-attagcatccagttcttatagtaataaggagaattcagagtatttaattatttttattttaatttgatgaagctctttgtatagatgccaaaagtattactgatttttatttatttatttctacaatcattttag

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 11
GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttcaaagtgatcatttatgtagaggttccctaaactgaaaaatgtataagatagtgtgttttacaatttaatctcagttta--cctatcaaaccatatggaaaagtgagtttaacttttacattattttttcag
|||||||||||| ||||||  ||||||||||| || ||||| |||||||| ||||||          || || ||       || |||  |  |       ||||  || ||  ||  |||| ||||    | | | || |    |||        ||   ||| ||| ||||| |||  ||            
GAGTCTGGCCAACTCTCAGCTACTGATTATGTTCGAATAACCAGCACTGAGTGgtatat-------atgctctttcg----aagcttcttttta-------atgttgaaaatt-tgctttttccaatgagcttttacttgaaagttatgtgtttgcatttgaaa-tgactttaagtttgtcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137635|gb|CB922973.1|CB922973
EST:     TCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG                         TGCTAGAATCTTCAACATGTATCCAAGGAAAGGAGCAATACTTGCTGGATC
genomic: TCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttc ... attttttcagTGCTAGAATCTTCAACATGTATCCAAGGAAAGGAGCAATACTTGCTGGATC
EST: gi|27582296|gb|CB004991.1|CB004991
EST:     TCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG                         TGCTAGAATCTTCAACATGTATCCAAGGAAAGGAGCAATACTTGCTGGATC
genomic: TCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttc ... attttttcagTGCTAGAATCTTCAACATGTATCCAAGGAAAGGAGCAATACTTGCTGGATC
EST: gi|30131395|gb|CB916734.1|CB916734
EST:     TCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG                         TGCTAGAATCTTCAACATGTATCCAAGGAAAGGAGCAATACTTGCTGGATC
genomic: TCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttc ... attttttcagTGCTAGAATCTTCAACATGTATCCAAGGAAAGGAGCAATACTTGCTGGATC
EST: gi|30295952|gb|CB972746.1|CB972746
EST:     CTGGCCAAATCTCAGTCACCTGATTATGTCCGGATAACAAGCACTGAATG                         TGCTAGAATCTTCAACATGTATCCAAGGGAAAGGAGCAATACCTTGCTGGA
genomic: CTGGCCAAATCTCAGTCAC-TGATTATGTCCGGATAACAAGCACTGAATGgtatgctttc ... attttttcagTGCTAGAATCTTCAACATGTATCCAAGG-AAAGGAGCAATAC-TTGCTGGA