1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAGGGTTTGCCGCTTAGAAAGTCTGAGCAGGCTTTCTATTTGGAATGGGCTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAGgttcttcatcttttctgttttgggaaattagtggtcacttatatttgttttaaatagttcataatttgagtattaattaaataggtaatcaaaactcaag...
species | Vitis vinifera |
transcript | Vv06s0009g01080.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAG ATCCATACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|33407329|gb|CF212956.1|CF212956
genomic: CTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAGgttcttcatc ... tttctaacagATCCATACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAG ATCCATACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|110391838|gb|EC956841.1|EC956841
genomic: CTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAGgttcttcatc ... tttctaacagATCCATACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAG ATCCATACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|33407256|gb|CF212883.1|CF212883
genomic: CTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAGgttcttcatc ... tttctaacagATCCATACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAG ATCCATACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
genomic: CTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAGgttcttcatc ... tttctaacagATCCATACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGGTTTGCCGCTTAGAAAGTCTGAGCAGGCTTTCTATTTGGAATGGGCTGTTCACTCCTTCAGGATCACTAACTGCAGTGTTCAAGACACTACTCAGgttcttcatcttttctgttttgggaaattagtggtcacttatatttgttttaaatagttcataatttgagtattaattaaataggtaatcaaaactcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa