Sequence
atgc intronic sequence ATGC exonic sequenceGGGGTCAGTGTGATAATTGCTCCAAATGGCGAAAGTTGCCCATAGATGTTTTTCTCCCTCTCAAGTGGACATGTGCAGACAACATTTGGGATTTGAGCAGgtgcaatgctttttctttatatgttcttttatttattttctgttcttaacaagcatgaagcatctcatgagatgaaagctggttgactaatctacatcttcatggtttatgatgcgcttctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 6
GGGGTCAGTGTGATAATTGCTCCAAATGGCGAAAGTTGCCCATAGATGTTTTTCTCCCTCTCAAGTGGACATGTGCAGACAACATTTGGGATTTGAGCAGgtgcaatgctttttctttatatgttcttttatttattttctgttcttaacaagcatgaagcatctcatgagatgaaagctggttgactaatctacatcttcatggtttatgatgcgcttctag
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GGGCTCAGTGTGATGATTGCTCTAAATGGCGAAAGCTGCCCGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATTCAAGCAGgtgctccaatgttattttaagaccacttctttatatgagatagtgataaaataatttacaattcttattgtgggcattcttttttaag-----------------------------------
upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 12
GGGGTCAGTGTGATAATTGCTCCAAATGGCGAAAGTTGCCCATAGATGTTTTTCTCCCTCTCAAGTGGACATGTGCAGACAACATTTGGGATTTGAGCAGgtgcaatgctttttctttatatgttcttttatttattttctgttcttaacaagcatgaagcatctcatgagatgaaagctggttgactaatctacatcttcatggtttatgatgcgcttctag
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GGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTGCCTGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTGTGAAAATGTTTGGGATTCAAGCAGgtgctccaatattattttaa--gaccacttctttatatgagatagtgataaaataatttacaattcttggtgtgaacattttttttcag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30300173|gb|CB976967.1|CB976967EST: TCTCCCTCTCAAGTGGACATGTGCAGACAACA-TTGANGGATTTGAGCAG GTGTTCATGTTCTGCACCAGATGAGTGGAATCCAAAGGAATCAGAAAGTCT
genomic: TCTCCCTCTCAAGTGGACATGTGCAGACAACATTTG--GGATTTGAGCAGgtgcaatgct ... gcgcttctagGTGTTCATGTTCTGCACCAGATGAGTGGAATCCAAAGGAATCAGAAAGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGTCAGTGTGATAATTGCTCCAAATGGCGAAAGTTGCCCATAGATGTTTTTCTCCCTCTCAAGTGGACATGTGCAGACAACATTTGGGATTTGAGCAGgtgcaatgctttttctttatatgttcttttatttattttctgttcttaacaagcatgaagcatctcatgagatgaaagctggttgactaatctacatcttcatggtttatgatgcgcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG