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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatatcatttggttggcttgtttatgtattttcttaatatctgacaattctcagatgcttccttatgaagttgaacttatgttctcatttaatttcagg...

Basic information

species Vitis vinifera
transcript Vv06s0004g06860.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 11
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatatcatttggttggcttgtttatgtatt--ttcttaatatctgacaattctcagatgcttccttatgaagttgaacttatgttctcatttaatttcagg
|||| ||||||| || ||||| || |||||||| || ||| | |||||||||||||| || || || || || ||||||||||||||||| |||||||||||  ||   |    | | ||    |  ||||    |||  |  |   || ||  ||| |  ||  ||   |   || |||  |     | |  ||||    |
AGAATTGTTTGCACAAACAAAATACAAGGAAGCAGCTGAGTTGGCTGCAGAATCTCCTCAAGGTCTTCTCCGAACTCCTGATACTGTTGCAAAATTTCAGgtgcatttctgctcttgattacagagctattaacacttcttcacctccattttacagctattt--ttcacattctgtactgttaaaagcttaaaattatgtg

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 11
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatatcatttggttggcttgtttatgtatt--ttcttaatatctgacaattctcagatgcttccttatgaagttgaacttatgttctcatttaatttcagg
|||| ||||||| || ||||| || |||||||| || ||| | |||||||||||||| || || || || || |||||||| |||||||| |||||||||||  ||   |    | | ||    |  ||||    |||  |  |   || ||  ||| |  ||  ||   |   || |||  |     | |  ||||    |
AGAATTGTTTGCACAAACAAAATACAAGGAAGCAGCTGAGTTGGCTGCAGAATCTCCTCAAGGTCTTCTCCGAACTCCTGAGACTGTTGCAAAATTTCAGgtgcatttctgctcttgattacagagctattaacacttctttacctccattttacagctattt--ttcacattctgtactgttaaaagcttaaaattatgtg

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 9
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatatcatttggttggcttgttt-atgtattttcttaatatctgacaattctcagatgcttccttatgaagttgaacttatgt---tctcatttaatttcagg----
 ||||||||||| || ||||| || |||||||| || ||||| |||||||| ||||| ||||| ||| || | |||||||| |||||||| |||||||||||  | | | ||||    |  ||  | ||||         | |||   |   |||    | ||||| | | ||   || | ||    |||   | ||    ||     
GGAACTGTTTGCGCAAACAAAATACAAGGAAGCAGCTGAGCTGGCTGCAGAGTCTCCGCAGGGCCTCTTGAGGACTCCTGAAACTGTTGCGAAATTTCAGgtg-agcttctggtattttaattcgacgtat-------gaagctgttgaggttcatgaacatccttctaatgtcccacctctgcatgtcttcgtaaaccatagtgaat

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 11
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatat---catttggttggcttgtttatgtattttcttaatatctgacaattctcagatgc-ttccttatgaagttgaacttatgttctcatttaatttcagg
|||| | ||||||||||| ||||||||||||||||| |||||||||||| |||| ||||| ||| | || ||||||||||| |||||||| ||||||||||||| |   |||       |||  |  ||  || ||  |      ||  || |     |||| |||  | |   ||    |  | ||| | || |   | ||  
AGAATTATTTGCTCAGACCAAGTATAAGGAAGCTGCAGAGCTTGCTGCACAATCACCACAAGGAGTACTTCGTACTCCTGACACTGTTGCTAAATTTCAGgtatttatgcatcacacatgctgatccattcatatttcttggtcttgttaagtt---aatgcattcagtttagggtgtgcccgaggttttaatatcgctccaa-

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 11
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtat------atcatttg-gttggcttgtttatgtattt---tcttaata--tctgacaattc---tcagatgcttccttatgaa-gttgaacttatgttctcatttaatttcagg--------------------------------------
|||| | ||||||||||| ||||||||||||||||| |||||||||||| |||| ||||| ||| | || ||||||||||| |||||||| |||||||||||||      ||||       ||     || || | | |   ||||  ||  ||     ||||   | ||    | ||| ||||       | | || |  | || |  | ||                                         
AGAATTATTTGCTCAGACCAAGTATAAGGAAGCTGCAGAGCTTGCTGCACAATCGCCACAAGGAGTACTTCGTACTCCTGACACTGTTGCTAAATTTCAGgtatttacgcatcacacatactgatccattcatatttcttggtcttggtaagtcaatgcattcaatttagggtgtgcctaatgactaccacattaatatgttaatatgctgtctatctcaagttcttgagttgcctttgttcatttgctttcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 10
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatatcatt-tggttggcttgtttatgtatt--ttcttaata--tctgacaattctcagatgcttcct------tatgaagt-tgaacttatgttctcatttaatttcagg--------------------------------------------------------
|||| | ||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||| | || || |||||||| |||||||| |||||||||||| |   |  |   | | || | | |||  |   |   | |   |||  |   | | |  || || ||      | ||  || |  | | ||  |  || || || |  |                                                         
AGAATTATTTGCTCAGACCAAGTATAAGGAAGCTGCAGAACTTGCTGCAGAATCTCCACAAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGgtacactttcgtatctagattttctctgttgtacatgccagtgcttcttgctcctgttaagtgttttctcttagttgtgtggtgtttattcattgtggcaatttatatgggagttcaatatgcttttttttcatctagttcttgatttcttttatcaatttttttcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 11
AGAACTGTTTGCTCAGACAAAGTATAAGGAAGCTGCGGAGCTTGCTGCAGAATCTCCACAGGGACTCCTGCGTACTCCTGATACTGTTGCCAAATTTCAGgtatatcatt-tggttggcttgtttatgt---attttctta-atatctgacaattctcagatgcttcct--------tatgaagttgaacttatgttctcatttaatttcagg--------------------------------------------
|||| | ||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||  ||| | || || |||||||| |||||||| |||||||||||| |   || || || | || | | |||   |  | |       |||      | | |  || || ||        ||||  ||| |     |||    |||||  |    |                                            
AGAATTATTTTCTCAGACCAAGTATAAGGAGGCTGCGGAGCTCGCTGCAGAATCTCCACGAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGgtacacttttgtgtttagattttctctgttgtacatgccggtgcttcttgttcctgttaagtgttttctctcagttgtatggtgtttattaattgtggcgatttatatgggagttcaatatgcttttttttcatctatttctttattttcttttcag