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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGTCTTAATCAGACCATAGGCCCAGTGTCCTTAGCAACACTTTCTGGGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgtttttcttttttctagtgaacattttcttctttctaccatttactgcgaagtttgatcctggatttaacacaacag

Basic information

species Vitis vinifera
transcript Vv06s0004g06120.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 11
ATATGGTCTTAATCAGACCATAGGCCCAGTGTCCTTAGCAACACTTTCTGGGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgtttttcttttttctagtgaacattttcttctttcta--ccatttactgcgaagtttgatcctggatttaacacaacag
|||||||||||||||||||||||| || || ||  |||| || |||||| | ||||| || |||||||| |||||  |  | ||||||||||||||||||||| | |  ||            ||| |   ||| |||||| |||  | ||||  |||  |   ||||  | | |  || |||||||
ATATGGTCTTAATCAGACCATAGGTCCTGTTTCAATAGCCACTCTTTCTAGTGGTGGAATTGATGAGTCTGGGGGAGCAGTTCCTTGGGGAAGGGATCAGgtcctgcaattc-----------agtaactttttacttcttcctattcaatttcttgcatatgctgattttagttggaaaacaacag

upper sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G39040.1 (Glycine max), 5'ss of exon 13
ATATGGTCTTAATCAGACCATAGGCCCAGTGTCCTTAGCAACACTTTCTGGGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgtttttcttttttctagtgaacattttcttctttctaccatttactgcgaagtttgatcctggatttaacacaacag
|||||||||||||||||| |||||||| |||||  |  | || ||||||   ||||| || || ||||| || || ||    ||||||||||||||||||||| ||   | |||| || |  || |     || |     ||| |   |||||||       ||||  |    | ||||||||||
ATATGGTCTTAATCAGACAATAGGCCCTGTGTCAATTTCCACCCTTTCTAATGGTGGAATAGACGAGTCTGGTGGATCAGCTCCTTGGGGAAGGGATCAGgtcctc---tatttcattatcttatt---tcttcttcctattcaatattttactgtatg--ctgattttaatctgaacacaacag

upper sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G37090.1 (Glycine max), 5'ss of exon 12
ATATGGTCTTAATCAGACCATAGGCCCAGTGTCCTTAGCAACACTTTCTGGGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgtttttcttttttctagtgaacattttcttctttctaccattt-actgcgaagtttgatcctggatttaacacaacag
|||||||||||||||||| |||||||| |||||  |  | || ||||||   ||||| || || ||||| ||||| ||    ||||||||||||||||||||| ||   | |||| || |  ||        |||||||||  ||  |||| ||||       ||||  |    | ||||||||||
ATATGGTCTTAATCAGACAATAGGCCCTGTGTCAATTTCCACCCTTTCTAATGGTGGAATGGACGAGTCTGGGGGATCAGCTCCTTGGGGAAGGGATCAGgtcctc---tatttcattatctta--------tttcttcttcataatattttactgtatg--ctgattttaatctgaacacaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32270442|gb|CD719601.1|CD719601
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGG
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGG
EST: gi|30324341|gb|CD007603.1|CD007603
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|351041361|gb|FQ447488.1|FQ447488
EST:     TCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
genomic: TCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|32248981|gb|CD714800.1|CD714800
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|32272115|gb|CD721274.1|CD721274
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|32248091|gb|CD713910.1|CD713910
EST:     GGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCNAG                         GG-CATCTTGTTGATCTTGGTCAAAGAGAGGTGAAAGTACTGCTGCAATC
genomic: GGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATC-AGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATC
EST: gi|22012057|gb|BQ797091.1|BQ797091
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|32249018|gb|CD714837.1|CD714837
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|30327216|gb|CD010478.1|CD010478
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|32270752|gb|CD719911.1|CD719911
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|30135654|gb|CB920992.1|CB920992
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|30131038|gb|CB916377.1|CB916377
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT
EST: gi|32267532|gb|CD716495.1|CD716495
EST:     GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAG                         GGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGTACTGCTGCAATCT
genomic: GGGGTGGGATCGATGAGTCAGGGGGGTCCATGCCTTGGGGAAGGGATCAGgtcatcctgt ... aacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCT