Sequence
atgc intronic sequence ATGC exonic sequenceTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCTgtaagttcttcttccattggttgtatttgaagagattgccactatcagtgatgaatgggtaaaaatggtttcctatgatttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G07980.1 (Glycine max), 5'ss of exon 11
TCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCTgtaagttcttcttccattggttgta-tttgaagagattgccactatcagtgatgaatgggtaa------aaatggtttccta--tgatttgcag-------
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TCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCTgtaagtt-tgattaagttatttgaaatttggggttattttcttggatgaaacaaaataagttaatgcatatatgatgcccaggttgttttgcataggcatt
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G15470.3 (Glycine max), 5'ss of exon 3
TCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCTgtaagttcttcttccattggttgtatttgaagagattgccactatcagtgatgaatgggtaaaaatggtttcc-tatgatttgcag
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TCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCTgtaagtt-tgatttagttattcgaaattt--ggggttgttttcatggatga--aacaaaataagttaatgcatatatgatgcccag
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G46220.3 (Arabidopsis thaliana), 5'ss of exon 10
TCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCTgtaagttcttcttccattggttgtatttgaagagattgccactatcagtgatgaatgggtaaaaatggtttcctatgatttgcag-
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TCTTTCCTAAATATGCAGCTGTACGAAAAAGCGCTAGACCTTTTCGAAGATGACCAATCAACTGCAgtaagtacttt---cagtcattttgcacgccatgtttactactcaaagaagctagtgtttaacactttcttttcttcttgtcctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161709009|gb|FC058795.1|FC058795EST: AGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCT GTTATTTTACACAAACATTTATTAAGAACAACAGCTGCCTCTATTGTGGAC
genomic: AGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCTgtaagttctt ... tgatttgcagGTTATTTTACACAAACATTTACTAAGAACAACAGCTGCCTCTATTGTGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCTgtaagttcttcttccattggttgtatttgaagagattgccactatcagtgatgaatgggtaaaaatggtttcctatgatttgcag
- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGATG