Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGGACTTTGGCATTTCATATATCGCAGCATATATCTGGATCAGTATGTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgttaaatctttgtgtcaacttcactggacatgagttctgggttcttttctgttgtctatgtcttttctgctttgttgctgtcaggaaaataacaagttcctcttttgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g02820.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G29450.3 (Glycine max), 5'ss of exon 11
CTTTTGGACTTTGGCATTTCATATATCGCAGCATATATCTGGATCAGTATGTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgttaaatctttgtgtcaacttcactggacatgagttctgggttcttttctgttgtctatgtcttttctgctttgttgctgtcaggaaaataacaagttcctcttttgcag
 |  |||  | ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||| | | |  ||||||||||||||    ||||       |||   | |||   |  | |||  || | | || || || |   |  ||  | |  || | ||||||| |                              
TTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCAATTAACACTCCTAAGCAGCAGAAAAGgtagcgatgttg-----ctgt---agctttttttta-atgcatttttg-ttattgtcagcaat--ataacctgcctccgttgttgcag------------------------------

upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G40080.1 (Glycine max), 5'ss of exon 12
CTTTTGGACTTTGGCATTTCATATATCGCAGCATATATCTGGATCAGTATGTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgtta-aatctttgtgtcaacttcactggacatgagttctgggttcttttctgttgtctatgtcttttctgctttgttgctgtcaggaaaataacaagttcctcttttgcag
 |  |||  | ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||| |||| ||||||| | | |  ||||||||||||||    | ||      | |||  |     |  |    |||  || | | || || || |   |  ||  | | ||| | ||||| | |                              
TTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCGATTAACACTCCTAAGCAGCAGAAAAGgtagcgattttgtggattatgttgctgtaactttttttatgcatttttg-ttattgtcagcaat--ataacctgtctccgttgttacag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22014769|gb|BQ799803.1|BQ799803
EST:     GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAG                         ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
genomic: GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgt ... tcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
EST: gi|22014874|gb|BQ799908.1|BQ799908
EST:     GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAG                         ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
genomic: GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgt ... tcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
EST: gi|110360647|gb|EC923921.1|EC923921
EST:     GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAG                         ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
genomic: GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgt ... tcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
EST: gi|22014663|gb|BQ799697.1|BQ799697
EST:     GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAG                         ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
genomic: GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgt ... tcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
EST: gi|33403777|gb|CF209404.1|CF209404
EST:     GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAG                         ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
genomic: GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgt ... tcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
EST: gi|22014543|gb|BQ799577.1|BQ799577
EST:     GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAG                         ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
genomic: GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgt ... tcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
EST: gi|110412539|gb|EC978290.1|EC978290
EST:     GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAG                         ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
genomic: GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgt ... tcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
EST: gi|110375913|gb|EC940942.1|EC940942
EST:     GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAG                         ATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT
genomic: GTATCTTCGGAGTTCTCACCACCAATTAACAGTTCCAGACAGCAGAAAAGgtaaaagtgt ... tcttttgcagATTATATAGAGCTTACCAGAAGCTTTATGCTTCCATGCATGATAGAGGAGT