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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaatctcttccttgagtgttacacaaatctttcttcatgggctaatcgagattaatcttctttccacaaaag

Basic information

species Vitis vinifera
transcript Vv06s0004g02140.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM5G870170_T02 (Zea mays), 5'ss of exon 11
TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaatctcttccttgagtgttacacaaatctttcttcatgggctaatcgagattaatcttctttccacaaaag-----------------
|||||     |||||||||| |||||| ||||||| ||||||||||||||  |||| |  || ||||| ||||| | |||| |||| || || |||| |||   |    ||||  |   ||| || || ||  ||||  ||   |   ||| |  | |   | |||  ||  ||                  
TTTGTCTGCCTTACTCAACCAATCAACGCTCTGGCTTTTGTTTTTGATGGTATCAATTACGGAGCATCAGATTTCGGATATGCTGCCTACTCAATGgcaagctgacagacttc--tacttgtcacgcatattcttcta-ataaacc--tcgtgccttacaatttttttactgaaccatgcatgtatcgtcag

upper sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G03930.1 (Glycine max), 5'ss of exon 11
TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaatctct--tccttgagtgttacacaaatctttcttcatgggctaatcgagattaatcttctttccacaaaag-------------------------
||||||||||| ||||||||  | || ||| | || |||||||||||||| ||||||||||| |||||||||||||||||||| || |  |||||||| ||| |  |||    |  || | |||||||      | |  | |  |||  ||  ||  |  |   ||    |  || |                         
TTTGTTGCAGTCACTCAACCCCTGAATTCTATAGCATTTGTTTTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattttcttccattttttaatgttacatggtattatgataaatggcatattcagccttctgcactaaatattaaggactacttcattatggtaactctcag

upper sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G41460.1 (Glycine max), 5'ss of exon 11
TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaatctcttccttga--gtgttac-acaaat-----------ctttcttcatgggctaatcgagattaatcttctttccacaaaag----
||| ||||||| ||||||||  | || ||| | || ||||| |||||||| ||||||||||| |||||||||||||||||||| || |  |||||||| ||| |  |||     || |  || |||  | ||||           | |||| | |    || |   || || | || ||     ||       
TTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattttcttccattttatggtattatgataaatggcatattcagccttctgccttaaatatttaggactact-ttattatggtaactctcag

upper sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA19G43330.1 (Glycine max), 5'ss of exon 9
TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaatct-cttccttgagtgttacacaaatctttcttcatgggctaatcgagattaatcttctttccacaaaag--------------------------
||||||| ||| ||||||||  | || ||| | || ||||||||| |||| ||||||||||| |||||||||||||||||||| || |  |||||||| ||| |  ||| |    || | |||||||      | |  | |  |||  ||  ||  |  |   ||    |  || |                          
TTTGTTGTAGTCACTCAACCCCTGAATTCTTTAGCATTTGTTTTTTATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGGTGAgtattttcttccatttttaatgttacatggtattatgataaatggcatattcagccttctgcactaaatattaaggactacttcattatggtaactctcaag

upper sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G14270.1 (Glycine max), 5'ss of exon 9
TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaatctct--tccttgagtgttacacaaatctttcttcatgggctaatcgagattaatcttctttccacaaaag-------------------------
||||||||||| ||||||||  | || ||| | || ||||||||| ||||  |||||||||| |||||||||||||||||||| || |  |||||||| ||| |  |||    |  || | |||||||      | |  | |  |||  ||  ||  |  |   ||    |  || |                         
TTTGTTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTTTTTTATGGTATCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattttcttccattttttaatgttacatggtattatgataaatggcatattcagccttctgcactaaatattaaggactacttcattatggtaactctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30252403|gb|CB969954.1|CB969954
EST:     ATGGGGTCAACTTTGGTGCATCCGATTTTGCATATTCTGCATATTCCATG                         GTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
genomic: ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaa ... tccacaaaagGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
EST: gi|110698510|gb|EE076088.1|EE076088
EST:     ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATG                         GGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCCG-CCA
genomic: ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaa ... tccacaaaagG-TTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTC-GTCCA
EST: gi|33405457|gb|CF211084.1|CF211084
EST:     ATGGGGTCAACTTTGGTGCATCCGATTTTGCATATTCTGCATATTCCATG                         GTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
genomic: ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaa ... tccacaaaagGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
EST: gi|46918193|gb|CN547522.1|CN547522
EST:     ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATG                         GTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
genomic: ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaa ... tccacaaaagGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT