1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTCTGATATGTATGGAGCTGCAGTTTTAGATGCTTGCGAGCAAATAAAAGCACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctcattgttgtttctgcatgtacatgcagcatattattcctttgagtgatacactctagagatgcatgcttccttttcttagatgaaaaatact...
species | Vitis vinifera |
transcript | Vv06s0004g02030.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAG CTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCACGGATTTEST: gi|161719982|gb|FC067724.1|FC067724
genomic: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctca ... ttattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
EST: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAG CTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCACGGATTTEST: gi|161706729|gb|FC055894.1|FC055894
genomic: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctca ... ttattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
EST: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAG CTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCACGGATTTEST: gi|110699874|gb|EE077267.1|EE077267
genomic: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctca ... ttattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
EST: GAGCCGATAGCTTC-AAACGTAATTTTAGCTCTTTCGCTGAG CTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
genomic: GAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctca ... ttattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGATATGTATGGAGCTGCAGTTTTAGATGCTTGCGAGCAAATAAAAGCACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctcattgttgtttctgcatgtacatgcagcatattattcctttgagtgatacactctagagatgcatgcttccttttcttagatgaaaaatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata