Sequence
atgc intronic sequence ATGC exonic sequenceGTGCTTGCTTTTGAAGCAGGAAGGAAACACAAAATCAGAGTCAATACGATATCTGCTGgtacattgctcattctttttcttttgttgttttgcacactatttttttaaaaccatgcaacgtgtccttctcatggccccctacatcctccaactgcagc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 11
GTGCTTGCTTTTGAAGCAGGAAGGAAACACAAAATCAGAGTCAATACGATATCTGCTGgtacattgctcattctttttcttttgttgttttgcacactatttttttaaaaccatgcaacgtgtccttctcatggccccctacatcctccaactgcagc--
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GTACTTGCTTTTGAAGCTGGAAGGAAAGGGAAAATCAGAGTTAACACCATATCTGCAGgtattttcttctgtaggaatattctcttggaataaa-gctagcattgtaaatct-tggaactaggtgattgcctatgcgataccatttggaaattaatgaca
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G10770.2 (Glycine max), 5'ss of exon 11
GTGCTTGCTTTTGAAGCAGGAAGGAAACACAAAATCAGAGTCAATACGATATCTGCTGgtacattgctcattctttttcttttgttgttttgcacactatt-tttttaaaaccatgcaacgtgtccttctcatggccccctacatcctccaactgcagc--
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GTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATATCTGCTGgtac--tggtgac-ctctctcttttccaaattaataaatttctgttttccttgtcttgctatgatttcttaatgtggaagacatggtggcgggggcaaatgtt
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 12
GTGCTTGCTTTTGAAGCAGGAAGGAAACACAAAATCAGAGTCAATACGATATCTGCTGgtacattgctcattctttttcttttgttgttttgcacac-tatttttttaaaaccatgcaacgtgtccttctcatggccc-cctacatcctccaactgcagc
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GTTCTTGCTTTTGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATATCCGCTGgtat-tggcgacctctctctcttttccaaattaatgaatgtctattttccttgtcttgctatggtttcttaatgtggaagacatggcagtagggactgatg-
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 11
GTGCTTGCTTTTGAAGCAGGAAGGAAACACAAAATCAGAGTCAATACGATATCTGCTGgtacattgctcattctttttcttttgttgttttgc-acactatttttttaaaaccatgcaacgtgtccttctcatggccccctacatcctccaactgcagc
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GTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATATCTGCAGgtat-tgatggcttcttatgacttcattagctaatgattttgtctgctttccttttctccatgtaacagcatataaatcggtgatctggcgcaagtgatgcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110690465|gb|EE067586.1|EE067586EST: CACAAAATCAGAGTCAATACGATATCTGCTG GCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGA
genomic: CACAAAATCAGAGTCAATACGATATCTGCTGgtacattgct ... aaaatatcagGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCTTGCTTTTGAAGCAGGAAGGAAACACAAAATCAGAGTCAATACGATATCTGCTGgtacattgctcattctttttcttttgttgttttgcacactatttttttaaaaccatgcaacgtgtccttctcatggccccctacatcctccaactgcagc
- - - - - TTGAAG
- - - - - TGAAGC
- - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctac