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ATTCCATATCCAGTTTTCCCAGGTGGAGCAATCATTGGATGCTCAGCTGGCTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAGgtaataatcgcagagatctcattggctgatatatttggaaacaacaaatctggatgatgacattttgaattaatacaaaattttcattacttggcaaatt...
species | Vitis vinifera |
transcript | Vv05s0102g01110.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAG GAATGCTGGCAGCAGAAGCTGCATTTGATGTACTTCATGAAGGCTCGAGCAEST: gi|110364442|gb|EC924185.1|EC924185
genomic: CTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAGgtaataatcg ... ttctttgcagGAATGCTGGCAGCAGAAGCTGCATTTGATGTACTTCATGAAGGCTCGAGCA
EST: CTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAG GAATGCTGGCAGCAGAAGCTGCATTTGATGTACTTCATGAAGGCTCGAGCAEST: gi|30251591|gb|CB969324.1|CB969324
genomic: CTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAGgtaataatcg ... ttctttgcagGAATGCTGGCAGCAGAAGCTGCATTTGATGTACTTCATGAAGGCTCGAGCA
EST: CTTCCTAAACGTCCC-AAGATAAAGGGAACACATACTGCAATGAAATCAG GAATGCTGGCAGCAGAAGCTGCATTTGATGTACTTCATGAAGGCTCGAGCAEST: gi|30251604|gb|CB969337.1|CB969337
genomic: CTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAGgtaataatcg ... ttctttgcagGAATGCTGGCAGCAGAAGCTGCATTTGATGTACTTCATGAAGGCTCGAGCA
EST: CTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAG GAATGCTGGCAGCAGAAGCTGCATTTGATGTACTTCATGAAGGCTCGAGCA
genomic: CTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAGgtaataatcg ... ttctttgcagGAATGCTGGCAGCAGAAGCTGCATTTGATGTACTTCATGAAGGCTCGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCCATATCCAGTTTTCCCAGGTGGAGCAATCATTGGATGCTCAGCTGGCTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAGgtaataatcgcagagatctcattggctgatatatttggaaacaacaaatctggatgatgacattttgaattaatacaaaattttcattacttggcaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa