1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttgcgatcttgttttgatatttatcaaatctttttatattttcagtttacctaaactcaactcactctcttaatcaagctgcaattgggttct...
species | Vitis vinifera |
transcript | Vv05s0094g01110.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACAAAATGGTTGCTCTGCAAAGGTTGTTAGAGCCCTATGGCATTTGTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCEST: gi|110408600|gb|EC974236.1|EC974236
genomic: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
EST: GGCTGTTAGAGCCCTATGGCATTTGTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCEST: gi|71883236|gb|DT032291.1|DT032291
genomic: GGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
EST: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCEST: gi|71885123|gb|DT034178.1|DT034178
genomic: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
EST: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCEST: gi|30301279|gb|CB978073.1|CB978073
genomic: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
EST: ACAAAATGGTTGCTCTGCAAAGGTTGTTAGAGCCCTATGGCATTTGTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCEST: gi|30136176|gb|CB921514.1|CB921514
genomic: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
EST: ACAAAATGGTTGCTCTGCAAAGGTTGTTAGAGCCCTATGGCATTTGTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCEST: gi|110362279|gb|EC925800.1|EC925800
genomic: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
EST: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCEST: gi|33404575|gb|CF210202.1|CF210202
genomic: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
EST: ACAAAATGGTTGCTCTGCAAAGGTTGTTAGAGCCCTATGGCATT-GTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCEST: gi|110375381|gb|EC940362.1|EC940362
genomic: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
EST: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAG GTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
genomic: ACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttg ... ctttctatagGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGgtctgtcttgcgatcttgttttgatatttatcaaatctttttatattttcagtttacctaaactcaactcactctcttaatcaagctgcaattgggttct
- - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactctc