1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GCTATACCAATCAAAGATCCCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctctttgacgctgaacttgtttgttacttgcctggttgtatttgtagtgtaattcttaccttatttcaacttttttag
species | Vitis vinifera |
transcript | Vv05s0077g01200.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|32267561|gb|CD716524.1|CD716524
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|30324963|gb|CD008225.1|CD008225
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|110711495|gb|EE088040.1|EE088040
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGCTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|161705859|gb|FC057136.1|FC057136
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|32272042|gb|CD721201.1|CD721201
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|32270535|gb|CD719694.1|CD719694
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|32269076|gb|CD718235.1|CD718235
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|30326297|gb|CD009559.1|CD009559
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|32270540|gb|CD719699.1|CD719699
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|30325174|gb|CD008436.1|CD008436
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|30324365|gb|CD007627.1|CD007627
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|30325851|gb|CD009113.1|CD009113
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATEST: gi|30327653|gb|CD010915.1|CD010915
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
EST: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAG GATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
genomic: CCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctct ... acttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATACCAATCAAAGATCCCATGGTCCTGTCAAAGATACACCAGACTTACAGAGTTGGTTATTTGAAGgtttggctctttgacgctgaacttgtttgttacttgcctggttgtatttgtagtgtaattcttaccttatttcaacttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG