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TTGGTTAAAACGGAAGATGGAATAAAAGTTATCACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTGgtaaatccataccttattttaattgtagagctttccaataacgtgttatatcattcttgcatcagagatgaacagcatttttgtatttagtttggtccct...
species | Vitis vinifera |
transcript | Vv05s0051g00870.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTG GTCGGGCGCCTAACACAAAAAGGTTGAACTTGGAAGTTGTAGGTGTGGAATEST: gi|294967112|gb|GW839987.1|GW839987
genomic: CACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTGgtaaatccat ... ttggttgtagGTCGGGCGCCTAACACAAAAAGGTTGAACTTGGAAGTTGTAGGTGTGGAAT
EST: CACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTG GTCGGGCGCCTAACACAAAAAGGCTGAA-TTGGAAGTTGTEST: gi|110729876|gb|EE106312.1|EE106312
genomic: CACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTGgtaaatccat ... ttggttgtagGTCGGGCGCCTAACACAAAAAGGTTGAACTTGGAAGTTGT
EST: CACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTG GTCGGGCGCCTAACACAAAAAGGTTGAACTTGGAAGTTGTAGGTGTGGAATEST: gi|161711343|gb|FC059926.1|FC059926
genomic: CACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTGgtaaatccat ... ttggttgtagGTCGGGCGCCTAACACAAAAAGGTTGAACTTGGAAGTTGTAGGTGTGGAAT
EST: CACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTG GTCGGGCGCCTAACACAAAAAGGTTGAACTTGGAAGTTGTAGGTGTGGAAT
genomic: CACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTGgtaaatccat ... ttggttgtagGTCGGGCGCCTAACACAAAAAGGTTGAACTTGGAAGTTGTAGGTGTGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGTTAAAACGGAAGATGGAATAAAAGTTATCACAGATCATGGTGAAGAATTGACAGCAGATGTTGTACTTTTTGCCACTGgtaaatccataccttattttaattgtagagctttccaataacgtgttatatcattcttgcatcagagatgaacagcatttttgtatttagtttggtccct
- - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagatgaa