Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcactgtgctttaatttcatcagtgattatcttttatgtggtcatttctttaaattagcaaaatggtttctatatgctatgctgcttcaaaatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os05g05230.1 (Oryza sativa), 5'ss of exon 11
GTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcactgtgctttaatttcatcagtgatta---tcttttatgtggtc--atttctttaaattagcaaaatggtttctatatgctatgctgcttcaaaatga
||||| |||||||| || | |||||||| ||||||||||| |||||||| |||||||| || || |||||||| || ||||||| ||||| |||||||||| | | || || || | || | ||| || | | | || | ||| | | || | |||| | || || | ||
GTTGGCTCAATTGAAGAAGAGATCTTGGACCGTGCAAAACAGAAGATGGGTATTGATGCAAAAGTTATCCAGGCTGGGCTGTTCAACACAACCTCCACAGgttagattaaatcctcgaacaaaattcatacttcctctgtttcatattataagactttctagcattgcccacat---tcacatatatgttaatgaatctagat--
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G097289_T02 (Zea mays), 5'ss of exon 6
GTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcactgtgctttaatttcatcagtgattatcttttatgtggtcatttctttaaattagcaaaatggtttctatatgctatgctgcttcaaaatga
|| || || ||||| || | ||| |||| |||||||||||||||||||| || ||||| || || |||||||| || ||||| || ||||||||||||||| || ||| | ||||| | | | ||| |||| | | | | || | ||| | |||| | | | | || ||
GTCGGCTCCATTGAAGAAGAGATCCTGGACCGTGCAAAACAAAAGATGGGTATCGATGCAAAAGTTATCCAGGCTGGGTTGTTTAACACAACTTCCACAGgtgagtttgagtgatctaattcc-tatttatttaatttttgtctactacacgactggaactcgcatgacattttcacgttcatttcccactacag-----
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G39630.1 (Glycine max), 5'ss of exon 9
GTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtca----ctgtgctttaatttcatca-gtgattatcttttatgtggtcatttctt---taaattagcaaaatggtttctatatgctatgctgcttcaaaatga
|| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| || ||||| ||||||| || | | || | ||| || ||||| | | | || |||| || |||| | ||| || | | ||
GTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGACTTTTCAACACTACTTCAACAGgtttgtagttttttatatttgtgccttatcctaggaatatctatca-atagttattttttggctaaaggtggaaagaggagggcaggaaaggtttattttt-------
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G28120.1 (Glycine max), 5'ss of exon 12
GTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcactgtgctttaatttcat------cagtgattatcttttatgtggtcatttctttaaattagcaaaatggtttctatatgctatgctgcttcaaaatga
|| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||||||| ||||||| || | | | || || | | || ||||| | || |||| || || || ||| | | | || | | |
GTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGTCTTTTCAACACAACTTCAACAGgtttgtagtttttttatatttgtgtcttgtcctaggaatatctacca-acagttatttttt--ggcta--aaggtggaaagaggagggcaggccggcaggggagg-
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G00640.2 (Glycine max), 5'ss of exon 11
GTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcact--gtgctttaatttcatcagtgattatcttt-tatgtggtcatttcttta--aattagcaaaatggtttctatatgctatgctgcttcaaaatga
|| ||||| ||||| ||||| || || |||||||| |||||||||||||||||||||||||| ||||| |||||||| | || || |||||||| ||||||| || | | |||| | ||| |||| | ||| | || | || || || | |||| | ||| ||||| | | || |
GTGGGATCTATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGGCTCTTTAACACAACTTCTACAGgtttgttctttgatacttttgctatatcc-tgatactatttatgagtagccagtttttgattaatttgaaaagca-tttctttgcattctgtaaagggggag---
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G06010.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcactgtgctttaatttcatcagtgattatcttttatgtggtcatttctttaaattagcaaaatggtttctatatgctatgctgcttcaaaatga
||||| || |||| || ||||| |||||||||||||| ||||||||||||||||| ||||| ||||| || || ||| | ||||| ||||||||||| ||| ||| | | || || || | || | ||| | | || | ||| | | |||||| | | |||
GTTGGCTCTGTTGAAGAAGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATTGACGCCAAAGTCATACAAGCTGGACTTTTCAACACAACTTCCACTGgtatgtctgtccgaaagaacaatatgagggcttctgctttctata-tcgatatggtaatctcttgatgtggtttttgtg-attatatcaacag-------
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G19310.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcactgtgctttaatttcatcagtgattatcttttatgtggtcatttctttaaattagcaaaatggtttctatatgctatgctgcttcaaaatga
||||||| ||||| || ||||| |||||||||||||| |||||||||||||| ||||| || ||||| || ||||| | ||||| |||||||| || ||| ||| | | || | ||||| || ||| || | || | | ||| | || | |
ATTGGATCCATTGAAGAAGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATCGATGCGAAAGTCATACAAGCAGGGCTCTTCAACACAACTTCTACTGgtaaaaagt----cttcatatatatatattcttatcaactaaaaa--catgatttggagactacatgctaatctctttgaatcat-caacag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32268402|gb|CD717561.1|CD717561EST: CATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAG CTCAGGACAGAAGAGAAATGTTAGAGGAGATCATGCGTAGAGGTACAAATT
genomic: CATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcact ... gtttctgcagCTCAGGACAGAAGAGAAATGTTAGAGGAGATCATGCGTAGAGGTACAAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGgttcgtcactgtgctttaatttcatcagtgattatcttttatgtggtcatttctttaaattagcaaaatggtttctatatgctatgctgcttcaaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaaa