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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTAAAGGCGCAGTCCAACTTGGTCTGGTGAACCCAGATCCCTTGTATCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAGgtatggaaatacacctgaaacataattctattataatttgggtgttgatagaaaaaggattaattagaggcagttgtgtaatgtggcag

Basic information

species Vitis vinifera
transcript Vv04s0044g01880.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G32810.1 (Glycine max), 5'ss of exon 10
ATTGTTAAAGGCGCAGTCCAACTTGGTCTGGTGAACCCAGATCCCTTGTATCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAGgtatgg-aaatacacctgaaacataattctattataatttgggtgttgatagaaaaaggatt-aattagaggcagttgtgtaatgtggcag------------
 |||| ||||| ||  | ||  |  || ||||| |  ||||| |||||||||||||||| |||||| | |||||||||||||| ||||||||||| ||||||| |  ||||  |||| |     || | || | |   |||| |  ||| |  |     ||| ||||  || |  |     |||     |             
GTTGTCAAAGGTGCTATGCACTTGAGTTTGGTGCATTCAGATGCCTTGTATCAGTTTGTGCTTCTACTTCAATATGCACTTCCACCAGCCATGAATATAGgtacgctaaatctaccttacggtcaaatatacttt---ttggtttctgaaaatatttcaatttaattttagtctctataaaaattcaatatgtttttattctc

upper sequence: Vv04s0044g01880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G21930.1 (Glycine max), 5'ss of exon 9
ATTGTTAAAGGCGCAGTCCAACTTGGTCTGGTGAACCCAGATCCCTTGTATCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAGgtatggaaatacacctgaaacataattctattataatttgggtgttgatagaaaaaggatt--aattagaggcagttgtgtaatgtggcag-----------
 |||| ||||| ||  | ||  || || ||||| |  ||||| ||||||||||||| || |||||| | ||||||||||||||||| |||||||| |||||||    | |  |  |   | |  | |||| ||||||   |        |  || | | ||  |||   |   ||   | || | |  |             
GTTGTCAAAGGGGCCATACACTTTAGTTTGGTGCATTCAGATGCCTTGTATCAGTTCGTGCTTCTACTTCAATATGCACTTCCGCCTGCCATGAATATAGgtacctgactctagttttta-actactctagtataatg-agccaccaccaagaacatgcttttaatagtaattaggattttagtctctctctcaaatttcaa

upper sequence: Vv04s0044g01880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G09390.1 (Glycine max), 5'ss of exon 10
ATTGTTAAAGGCGCAGTCCAACTTGGTCTGGTGAACCCAGATCCCTTGTATCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAGgtatggaaataca-----cctgaaacataattctattataatttgggtgttgatagaaaaaggattaattagaggcagttgtgtaatgtggcag-------
 || ||||||| |||   ||| | ||| ||||| | ||||||||||||||||||||||| |||||  | |||||||||||||| || || |||   ||||||||   ||||        |||| |  || || ||| ||  ||   |||   | |||   || |||    | |  |      | |||    |         
GTTATTAAAGGAGCAACACAATTGGGTTTGGTGCAACCAGATCCCTTGTATCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCTGCAATGGCTATAGgtataataatatcaaagctctgagatctacttttataattgttcaagtgggcacagaggtagaattg-caacacacgcacacgcaatacatcttttaattt

upper sequence: Vv04s0044g01880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G36030.1 (Glycine max), 5'ss of exon 10
ATTGTTAAAGGCGCAGTCCAACTTGGTCTGGTGAACCCAGATCCCTTGTATCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAGgtatggaaatacacctgaaacataattctattataatttgggtgttgatagaaaaagga---ttaattagaggcagtt-gtgtaatgtggcag----------
 || ||||||| |||   ||  | ||| ||||| | ||||||||||| ||||||||||| |||||  | |||||||||||||| ||||| |||   ||||||||   |  | |  |     ||| || |||||   || | | |||||  ||   |      ||  ||||  | | ||  | |||  |   |           
GTTATTAAAGGAGCAACACAGTTGGGTTTGGTGCAACCAGATCCCTTATATCAGTTTGTGCTTCTCCTTCAATATGCACTTCCACCAGCAATGGCTATAGgtataatatcaaagttc---tatacttttattagttttggtgggttgaacgaggtatatatttttgttagctgaaatttatttaaaatcataaaattcgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|111283806|gb|EE296907.1|EE296907
EST:     TCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAG                         GCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCA
genomic: TCAGTTTGTCCTTCTATTACAATATGCACTTCCGCCAGCCATGAACATAGgtatggaaat ... aatgtggcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCA